View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_88 (Length: 244)
Name: NF5400_high_88
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_88 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 15807748 - 15807522
Alignment:
| Q |
18 |
acttaaagcagcaattgcagctttgatctataatttcatagaaaagagg-gnnnnnnnntacacaaggaaattatgaaggtaatatcattagcagtagca |
116 |
Q |
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| T |
15807748 |
acttaaagcagcaattgcagctttgatctataatttcatagagaagagacggaaaaaaaaacatcagtaa-ttaggaaggtaatatcattagcagtagca |
15807650 |
T |
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| Q |
117 |
aagttgacaatgcatgtatgcgacatacaaacctcgggaaggtccatgatcactggtttaacaccgacagcatataatggaagaatattataatgctcat |
216 |
Q |
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| T |
15807649 |
aaattgaaaatgcatgtatgcgacatacaaacctcaggaaggtccatgatcactggtttaacaccgacagcatataatggaagaatattataatgctcat |
15807550 |
T |
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| Q |
217 |
actgtcccctcttattctcaacatctgc |
244 |
Q |
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| T |
15807549 |
actgtcccctcttattctcaacatctgc |
15807522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 45930068 - 45929928
Alignment:
| Q |
104 |
attagcagtagcaaagttgacaatgcatgtatgcgacatacaaacctcgggaaggtccatgatcactggtttaacaccgacagcatataatggaagaata |
203 |
Q |
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| T |
45930068 |
attagcagaagcaaagatgacaatgcatgtttgcagcatacaaacctggggaagtttcatgatctccggttcaacaccgataacatgtaacggaaggata |
45929969 |
T |
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| Q |
204 |
ttataatgctcatactgtcccctcttattctcaacatctgc |
244 |
Q |
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| T |
45929968 |
ttataatgctcatactgtcctttcttattctcaacatctgc |
45929928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 45930168 - 45930119
Alignment:
| Q |
18 |
acttaaagcagcaattgcagctttgatctataatttcatagaaaagaggg |
67 |
Q |
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| T |
45930168 |
acttaaagcagcaattgcagctttaatctataatttcatagaaaataggg |
45930119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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