View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_90 (Length: 243)
Name: NF5400_high_90
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 24273937 - 24274151
Alignment:
| Q |
8 |
cgaagaatattatatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaat |
107 |
Q |
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| T |
24273937 |
cgaataatattatatctttgagtcttctggacaagaaggggtttagttttaaaagtgaaggtggagctatacatatttt-caagggtt--caagtgtgat |
24274033 |
T |
|
| Q |
108 |
tttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatg |
207 |
Q |
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| T |
24274034 |
tctgaaaggtgtgaagcagagtactttgtactttttacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatg |
24274133 |
T |
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| Q |
208 |
acgaagttgtggcatatg |
225 |
Q |
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| T |
24274134 |
acgaagttgtggcatatg |
24274151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 53471311 - 53471192
Alignment:
| Q |
106 |
attttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagata |
205 |
Q |
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| T |
53471311 |
attttgaaaggtgtgaagaggggtactctgtactttctacaaggtactacgctaactgattatggtgttgttgcttccttcgagattgaccaagaagata |
53471212 |
T |
|
| Q |
206 |
tgacgaagttgtggcatatg |
225 |
Q |
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| T |
53471211 |
tgacgaaattgtggcatatg |
53471192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 9009089 - 9008961
Alignment:
| Q |
97 |
tcaagtgtaattttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgacc |
196 |
Q |
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| T |
9009089 |
tcaagtgtgattctaaaaggtgagaagcgaggtactctttaatttctacaaggtattacactatctgattatgttgctgtttcttccttcgatattgact |
9008990 |
T |
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| Q |
197 |
aagaagatatgacgaagttgtggcatatg |
225 |
Q |
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| T |
9008989 |
aagaagatatgacgaagttgtggcatatg |
9008961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 13417708 - 13417503
Alignment:
| Q |
19 |
atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaaggtg |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| || | || ||| | | |||| || ||||||||||||| |
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| T |
13417708 |
atatctctgagtcttttggacaagaaggggtttagtttcaaaagtgaaggtggagagttatacatgtttgcaagggt-tcaaccgtgattttgaaaggtg |
13417610 |
T |
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| Q |
119 |
tgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtg |
218 |
Q |
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|||| | | ||||| | |||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
13417609 |
tgaaacgatgtactctctactttctacaaggtactacactatctgcttaagttgttgttgcttcctccgagattgaccataaagatatgacgaggttgtg |
13417510 |
T |
|
| Q |
219 |
gcatatg |
225 |
Q |
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||||||| |
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| T |
13417509 |
gcatatg |
13417503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 28706293 - 28706506
Alignment:
| Q |
8 |
cgaagaatattatatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaat |
107 |
Q |
| |
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|||||||| | |||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||| ||| | | || ||||||| || |
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| T |
28706293 |
cgaagaatctgatatttttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtttg-caagggtt--caagtgtgat |
28706389 |
T |
|
| Q |
108 |
tttgaaa-ggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatat |
206 |
Q |
| |
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| |||| |||||||||| |||||| | ||||||||||||||||| || || ||||| || || |||||||||||| ||||||||||||||||||| |
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| T |
28706390 |
tcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattgaccaagaagatat |
28706489 |
T |
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| Q |
207 |
gacgaagttgtggcata |
223 |
Q |
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| T |
28706490 |
gacgaagttgtggcata |
28706506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 27367707 - 27367628
Alignment:
| Q |
146 |
aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatg |
225 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||| || |||||||||||||||||||| || |||||||||||| |
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| T |
27367707 |
aaggtactatgctatctgattctgttgttgttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcatatg |
27367628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 30047642 - 30047699
Alignment:
| Q |
168 |
tgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatg |
225 |
Q |
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|||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||| |
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| T |
30047642 |
tgttgttgttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatg |
30047699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 30047515 - 30047574
Alignment:
| Q |
19 |
atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctata |
78 |
Q |
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|||||| |||||||||||||||||||| |||||||||| ||| ||||||||||| |||| |
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| T |
30047515 |
atatctctgagtcttttggacaagaagaggtttagtttcaaaggtgaaggtggagttata |
30047574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 18726188 - 18726250
Alignment:
| Q |
146 |
aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatga |
208 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||| || |||| |||||||||||||| |
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| T |
18726188 |
aaggtactatgctatctgattatgttgttgttgcttcctccgaaattggccaagaagatatga |
18726250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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