View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_91 (Length: 242)
Name: NF5400_high_91
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 52183588 - 52183369
Alignment:
| Q |
1 |
taagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttggactgcaactctgtggactcgaatgttcaccggtgcaacaaa |
100 |
Q |
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| T |
52183588 |
taagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttgaactgcaactctgtggactcgaatgttcaccggtacaacaaa |
52183489 |
T |
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| Q |
101 |
attcctcggttttaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgacttttcaaatc |
200 |
Q |
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| T |
52183488 |
attcctcggtattaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactgttcaaatc |
52183389 |
T |
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| Q |
201 |
tgcaacacaacctgcatact |
220 |
Q |
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| T |
52183388 |
cgcaacacaacctgcatact |
52183369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 6679231 - 6679167
Alignment:
| Q |
88 |
ccggtgcaacaaaattcctcggttttaaacgctgcacacgcactcttacaggccaccaccgaacc |
152 |
Q |
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| T |
6679231 |
ccggtgcaacaaaattcctccatattgaacgccaaacacgcgctcttacaagccaccaccgaacc |
6679167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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