View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_93 (Length: 240)
Name: NF5400_high_93
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_93 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 852180 - 852370
Alignment:
| Q |
1 |
acatcaatattcaattcactttcgctacctacaaagtttcatatgcagcttccatcctctgcttgactacatcgaccttagctagtgccgctatagattc |
100 |
Q |
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| T |
852180 |
acatcaatattcaattcactttcgctacctgcaaagtttcatatgcagcttccatcctctgcttgactacatcaaccttagcaagtgctgctatggactc |
852279 |
T |
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| Q |
101 |
agctgacgatccctctgcctatttaagaattca-agaatgaaaaatgacaaatacaaattaacaggtgcttactcaaaaatggatctcaac |
190 |
Q |
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| T |
852280 |
agccgacgatccctctgcctataaaaaaaaacagaggatgaaagaaggcaaatgcaaattaatgggtgctgactcataaatggatctcaac |
852370 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 882551 - 882650
Alignment:
| Q |
13 |
aattcactttcgctacctacaaagtttcatatgcagcttccatcctctgcttgactacatcgaccttagctagtgccgctatagattcagctgacgatcc |
112 |
Q |
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| T |
882551 |
aattcacttttgctacctgcaaagtttcatatgcaacttccatcctctgcttgactacatcgaccttagcaagtgctgctatagattcagctgacgatcc |
882650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 239517 - 239612
Alignment:
| Q |
25 |
ctacctacaaagtttcatatgcagcttccatcctctgcttgactacatcgaccttagctagtgccgctatagattcagctgacgatccctctgcct |
120 |
Q |
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| T |
239517 |
ctacctgcaaagtttcatatgcagcttccatcctctgcttgactacatcgaccttagcgagtgccgatatagactcagacgaagatccctccgcct |
239612 |
T |
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