View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_1 (Length: 757)
Name: NF5400_low_1
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 694; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Complemental strand, 14434137 - 14433391
Alignment:
| Q |
1 |
agctaaatcttcttcagcttctgatcctatcaacaataattgcttcccttgttccaatggcacaacaatatccctctccactctctcacccaattccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14434137 |
agctaaatcttcttcagcttctgatcctatcaacaataattgcttcccttgttccaatggcacaacaatatccctctccactctctcacccaattccatc |
14434038 |
T |
|
| Q |
101 |
atcgatgctcagaagtaatcatctannnnnnngtatcttcgttattttatatatttgaattcacttagtctggtttttagattttatatgatatatgatg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14434037 |
atcgatgctcagaagtaatcatctatttttttgtatcttcgttattttatatatttgaattcacttagtctggtttttagattttatatgatatatgatg |
14433938 |
T |
|
| Q |
201 |
atttatatatgcttttgcaattaacaggggtgatccattggcatttgaatcatactggaagcagatgagtgataaatgtacggttgtgattaaaggatgg |
300 |
Q |
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| T |
14433937 |
atttatatatgcttttgcaattaacaggggtgatccattggcatttgaatcatactggaagcagatgagtgatgaatgtacggttgtgattaaaggatgg |
14433838 |
T |
|
| Q |
301 |
gaattgatgagttactacagtgactcgagtaacatgtgttggttcatgttgccagaattgagggatgagatagagagacttcatcatttagttggaaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433837 |
gaattgatgagttactacagtgactcgagtaacatgtgttggttcatgttgccagaattgagggatgagatagagagacttcatcatttagttggaaatg |
14433738 |
T |
|
| Q |
401 |
ctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtccctgatcaccc |
500 |
Q |
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| T |
14433737 |
ctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgttcgctttgtctcctttagatgtccctgatcaccc |
14433638 |
T |
|
| Q |
501 |
tatcaatgttgtttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatagtaaaa |
600 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14433637 |
tatcaatgttatttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatattaaaa |
14433538 |
T |
|
| Q |
601 |
tatgttttaggtctcatctacaaataaaatttattgggccgaccatgcaaggaaggttaactaacaatgtgtttaattttattttgtaggaatacaaaaa |
700 |
Q |
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| T |
14433537 |
tatgttttaggtctcacctacaaataaaatttactgggccgaccatgcaaggaaggttaactaacaatgcgtttaattttattttgtaggaatacaaaaa |
14433438 |
T |
|
| Q |
701 |
tgcaattaatatattgcattcaaggatgtttcaatggggtgatgatg |
747 |
Q |
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| T |
14433437 |
tgcaattaatatattgcattcaaggatgtttcaatggggtggtgatg |
14433391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 544
Target Start/End: Complemental strand, 14443164 - 14443011
Alignment:
| Q |
391 |
gttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtcc |
490 |
Q |
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||||| |||| ||| || |||||||| | |||||| | |||||||||||| ||||||| ||| | ||| ||||| ||| | ||||||| |||| | |
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| T |
14443164 |
gttggtaatgttgtcacaaaagataagttcatagtgttaggaaatggctctactcaacttttcaatgctcttttgtatgcactctctccttcagatccct |
14443065 |
T |
|
| Q |
491 |
ctgatcaccctatcaatgttgtttctcctactccttattactcggtgatctttc |
544 |
Q |
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||||||| ||||||||||||||| || || |||||||||||||||| ||||||| |
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| T |
14443064 |
ctgatcaacctatcaatgttgttgctgctgctccttattactcggtaatctttc |
14443011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 14443515 - 14443472
Alignment:
| Q |
54 |
ccaatggcacaacaatatccctctccactctctcacccaattcc |
97 |
Q |
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| T |
14443515 |
ccaatggcacaaaaaaatccctctccactttctcacccaattcc |
14443472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 549 - 637
Target Start/End: Complemental strand, 32598443 - 32598355
Alignment:
| Q |
549 |
ttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatagtaaaatatgttttaggtctcatctacaaataaaatttattgg |
637 |
Q |
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|||||||||||| || || |||| |||||||||||| ||| |||| |||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
32598443 |
ttataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgttttagacctcttctacaaataaaatttattgg |
32598355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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