View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_103 (Length: 240)
Name: NF5400_low_103
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_103 |
 | |
|
| [»] scaffold0913 (1 HSPs) |
| | |
|
| [»] scaffold0898 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17237789 - 17237558
Alignment:
| Q |
1 |
ctagctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |
|
|
| T |
17237789 |
ctagctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttaccccagtcggtgagata |
17237690 |
T |
|
| Q |
101 |
catacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtg |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17237689 |
catacatgttgacgaagttcttgaactgttatcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgacgctagaaaagtg |
17237590 |
T |
|
| Q |
201 |
gtggatagtttttcatctccacatgatgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
17237589 |
gtggatagtttttcatctccacatcatgatgt |
17237558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 32296196 - 32295992
Alignment:
| Q |
6 |
tttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatac |
105 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| |||||| | ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
32296196 |
tttctaatagagggggaataggagtttgtataatggatga----ggcacttttattttggcaaaaactgaatggtttactccagtccgtgaggtacat-- |
32296103 |
T |
|
| Q |
106 |
atgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgga |
205 |
Q |
| |
|
|||||||||| |||| || |||||||| ||| ||||| || ||||| |||||||||||||||||| |||||||| ||| |||| |||| ||||||| |
|
|
| T |
32296102 |
--gttggcgaagctcttggattgttatcatttttggaatgagttcatcaattacacttgggacctatcgattttgagattgttgcaaaaaaaatggtgga |
32296005 |
T |
|
| Q |
206 |
tagtttttcatct |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32296004 |
tagtttttcatct |
32295992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 20174362 - 20174425
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaa |
68 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20174362 |
ctttctaataaagcgggaataagagtttgtataagggatgatacatacacttttgttttggcaa |
20174425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 20174432 - 20174516
Alignment:
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttga |
187 |
Q |
| |
|
|||||||||| ||| |||| || |||||| |||||||||||| |||||||| |||||||| || ||||||| |||| ||||||| |
|
|
| T |
20174432 |
tacatgttggtgaaactcttggattgttatgagctttagaatgagtccatcaattacactttgggcctatcagtttttagcttga |
20174516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 52585971 - 52585754
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
52585971 |
agctttctaatagagtgggaataagagtttgtataagagatgatacagacacttttgttttggcaaaaactgaatggtttactccagtatgtgaggt--- |
52585875 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
|||||||| ||||| |||| |||| || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | ||||||||| |
|
|
| T |
52585874 |
-acatgttgacgaagctcttggactattgtcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgatgttaaaaaagtggt |
52585776 |
T |
|
| Q |
203 |
ggatagtttttcatctccacat |
224 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
52585775 |
ggatagtttttcatctgcacat |
52585754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 53581064 - 53581268
Alignment:
| Q |
9 |
ctaatagagtgggaatatgagtttgtata-agggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacat |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
53581064 |
ctaatagagtgggaataggagtttgtatataaggatgatacatgcacttttgttttggcaaaaactgaatggtttactctagtctgtgaggtacat---- |
53581159 |
T |
|
| Q |
108 |
gttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggata |
207 |
Q |
| |
|
||||| |||| |||| || ||||||||||||| |||||||| ||||| ||||||||| || |||||||||||||||| || | | |||||||||||||| |
|
|
| T |
53581160 |
gttggtgaagctcttggattgttatcagctttggaatgggttcatcaattacacttgagaactatcaattttgagctagatgtcaaaaaagtggtggata |
53581259 |
T |
|
| Q |
208 |
gtttttcat |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
53581260 |
gtttttcat |
53581268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 20685180 - 20685387
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||| ||||| |||||||||||| |||||| || |
|
|
| T |
20685180 |
ctttctaatagagtgggaatagcagtttgtataagggatgttacattcacttttgtttcggcaaaaactgaatcgtttactccagtatgtgagg----ta |
20685275 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
|||||||| ||| |||| || |||||||| |||| |||||| | ||||| |||||||||||||| |||||||||||||||| || | || |||||||| |
|
|
| T |
20685276 |
catgttggtcaagctcttggattgttatcaactttggaatggattcatcaattacacttgggaccaatcaattttgagcttgttgccaaaacagtggtgg |
20685375 |
T |
|
| Q |
205 |
atagtttttcat |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20685376 |
atagtttttcat |
20685387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4136155 - 4136378
Alignment:
| Q |
1 |
ctagctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttg-------gcaaaaattgaatggtttactccagtcgg |
93 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||| ||| ||||||| |||||||||||| |||| | |
|
|
| T |
4136155 |
ctagctttctaatagagtgggtataagagtttgtataagggatgatacatgcaatttttattttttttatagcaaaaaccgaatggtttactgcagtatg |
4136254 |
T |
|
| Q |
94 |
tgaggtacatacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaag |
193 |
Q |
| |
|
||||||||| ||||||||||| |||| || |||||||||||||||||||||| ||||| ||||| |||||||||||| |||| ||| || || | |
|
|
| T |
4136255 |
tgaggtaca----tgttggcgaagctcttggattgttatcagctttagaatgggttcatcaattacatttgggacctatcgatttcgaggttcgtgccaa |
4136350 |
T |
|
| Q |
194 |
aaaagtggtggatagtttttcatctcca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4136351 |
aaaagtggtggatagtttttcatctcca |
4136378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 39453354 - 39453194
Alignment:
| Q |
52 |
cacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttggcgaagttcttagactgttatcagctttagaatgggtcca |
151 |
Q |
| |
|
|||||||||| ||| ||| | |||||| ||||||| |||| |||||||| || |||||||||| ||||||| |||||||||||||||||||| || | |
|
|
| T |
39453354 |
cacttttgttatggtaaagactgaatgatttactctagtccgtgaggtatat----gttggcgaagctcttagattgttatcagctttagaatggttc-a |
39453260 |
T |
|
| Q |
152 |
tcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatagtttttcatc |
217 |
Q |
| |
|
| | ||||| ||| |||||||| ||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
39453259 |
ttaattacatttgagacctatcgattttgagcttgatgtcaaaaaagtggtggatagtttttcatc |
39453194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 8726662 - 8726760
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacat |
103 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| || |||||| |||| |
|
|
| T |
8726662 |
ctttttaataaaatgggaatatgagtttgtataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacat |
8726760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 9078549 - 9078647
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacat |
103 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| || |||||| |||| |
|
|
| T |
9078549 |
ctttttaataaaatgggaatatgagtttgtataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacat |
9078647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 18579863 - 18579652
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
18579863 |
agctttctaatagagtgggaataggagtttgtataagggatgatacaggcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggt--- |
18579767 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||||| ||||| || ||||| |||||||||||||||||| ||||||||||||| || | ||||||||| |
|
|
| T |
18579766 |
-acatgtttgcgaagctcttggattgttatcagctttggaatgagttcatcaattacacttgggacctatcgattttgagcttgatgccaaaaaagtggt |
18579668 |
T |
|
| Q |
203 |
ggatagtttttcatct |
218 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18579667 |
ggatagtttttcatct |
18579652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 15745901 - 15745691
Alignment:
| Q |
4 |
gctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacat |
103 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||| ||||||| ||||||||||| ||||| | |
|
|
| T |
15745901 |
gctttctaatagagtgggaataggagtctgtataagagatgatacaggtacttttgttttggtaaaaactgaatggcttactccagtctatgagg----t |
15745806 |
T |
|
| Q |
104 |
acatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtg |
203 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |||||||| ||||| |||||||||||| ||||| ||||||||||||| || | ||| |||||| |
|
|
| T |
15745805 |
gcatgttggcgaagctcttagattgttatcagctttggaatgggttcatcaattacacttgggatctatcgattttgagcttgatgccaaaaacgtggtg |
15745706 |
T |
|
| Q |
204 |
gatagtttttcatct |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15745705 |
gatagtttttcatct |
15745691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 33171238 - 33171025
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||| | || ||||| || |
|
|
| T |
33171238 |
ctttctaatagagtggtaataggagtttgtataagggatg--acatacacttttgttttggctaaaactgaatggtttactctaatctctgagg----ta |
33171145 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||| || |||| |||||||||| |||||| ||||||||||||| || | |||| | ||| |
|
|
| T |
33171144 |
catgttggcgaagctcttggattgttatcagatttagaatgagtttatcaattacacttggttcctatcgattttgagcttgatgccaaaaaaaagatgg |
33171045 |
T |
|
| Q |
205 |
atagtttttcatctccacat |
224 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
33171044 |
atagtttttcatctgcacat |
33171025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 5848906 - 5849123
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
5848906 |
agctttctaatagagtgggaataggagtttgtataagagatgatacatgcacttttgttttgacaaaagcataatggtttactccagtctgtgagg---- |
5849001 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
|||||||| |||||| |||| |||| ||| || ||||| ||||| | ||||||||||| || |||| |||| ||||||| |||| || | |||||||| |
|
|
| T |
5849002 |
tacatgttagcgaagctcttggactattaacaactttaaaatggattcatcacttacaattaggacatatcgattttgaatttgatgctaagaaagtggt |
5849101 |
T |
|
| Q |
203 |
ggatagtttttcatctccacat |
224 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
5849102 |
ggataatttttcatctacacat |
5849123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 36098582 - 36098782
Alignment:
| Q |
9 |
ctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatg |
108 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
36098582 |
ctaatagagttggaataggagtttgcataagagatgatacacacatttttgttttggtaaaaattgaagagtttactccagt--atgagg----tacatg |
36098675 |
T |
|
| Q |
109 |
ttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatag |
208 |
Q |
| |
|
|||| ||| | ||| | |||| ||| ||||||||||||| ||||| |||| || | | |||| ||||||||||||| || ||||||||| ||||| |
|
|
| T |
36098676 |
ttggggaaactgttaaattgttgtcaactttagaatgggt-catcatctacattttgaatctatttattttgagcttgatgcctaaaaagtggtagatag |
36098774 |
T |
|
| Q |
209 |
tttttcat |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
36098775 |
tttttcat |
36098782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 19051364 - 19051434
Alignment:
| Q |
21 |
gaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtc |
91 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||| | |||||||||| |
|
|
| T |
19051364 |
gaatatgagtttgtataaaggataatacagacaattttgttttggaaaaaactgaatgatctactccagtc |
19051434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 48026445 - 48026226
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
48026445 |
agctttctaatagagtgagaataggagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatggtttacttcagtctgtgaggt--- |
48026349 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgc--aagaaaagtg |
200 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || || |||| || |
|
|
| T |
48026348 |
-acatgttggcgaagttcttggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctaaaaaaaaatg |
48026250 |
T |
|
| Q |
201 |
gtggatagtttttcatctccacat |
224 |
Q |
| |
|
|||| ||||||||||||| ||||| |
|
|
| T |
48026249 |
gtgggtagtttttcatctacacat |
48026226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 10260204 - 10260427
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
10260204 |
ctttctactagagtgggaataggagtttgtataagggatgatacatgcacttttgttttggtaaaaactgaatggtttactccagtttgtgaggtaca-- |
10260301 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
||||||||||| |||| |||| || |||||||||||||||| ||||||||| | || ||||||||| ||||||||||||| || | ||||||||||| |
|
|
| T |
10260302 |
--tgttggcgaagctcttggactatttccagctttagaatgggttcatcacttataattaggacctatcgattttgagcttgatgctaaaaaagtggtgg |
10260399 |
T |
|
| Q |
205 |
atagtttttcatctccacatgatgatgt |
232 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |
|
|
| T |
10260400 |
atagtttttcatctgcacatcatgatgt |
10260427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 8783324 - 8783514
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||| |||||| |||| ||||||||| ||| || | | || |
|
|
| T |
8783324 |
ctttctaatagagtgggaatatgagtttgtagaagggacgatacaagcacttttattttgacaaaaactgaacggtttactctagtatgtaatg----ta |
8783419 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttaga--atgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaa |
197 |
Q |
| |
|
||||||||| || |||| || |||||||| ||||| | |||||| ||||| ||||||||||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
8783420 |
catgttggccaaactcttggattgttatcaactttataatatgggttcatcaattacacttgggacctatgaattttgagtttgatgcaaaaaaa |
8783514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 9605193 - 9605087
Alignment:
| Q |
109 |
ttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatag |
208 |
Q |
| |
|
||||||||| |||| || |||||||||||||| ||||| | ||| | ||||| ||||||||| ||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
9605193 |
ttggcgaagctcttggattgttatcagctttaaaatggtttcattaattacatttgggacctgtcaattttgagtttgacgcca-aaaagtggtggatag |
9605095 |
T |
|
| Q |
209 |
tttttcat |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
9605094 |
tttttcat |
9605087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 9605242 - 9605189
Alignment:
| Q |
13 |
tagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggc |
66 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9605242 |
tagagtgggaataagagtttgtataagggatgatacaaacacttttgttttggc |
9605189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 17834559 - 17834506
Alignment:
| Q |
171 |
atcaattttgagcttgacgcaagaaaagtggtggatagtttttcatctccacat |
224 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||||||||||||| ||||| |
|
|
| T |
17834559 |
atcaattttgagcttgatgctaaaaaagtggtggatagtttttcatctgcacat |
17834506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 15609892 - 15610099
Alignment:
| Q |
13 |
tagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
15609892 |
tagagtgggaatatgagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatgatttactccagtttgtgag----ctacatgttgg |
15609987 |
T |
|
| Q |
113 |
cgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatagtttt |
212 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
15609988 |
tgaagatcttggattgttatcagctttagaatgagttcatcacttacacttaggacctatcgattttgagcttgatgcgaaaaaagtggtggatagtttt |
15610087 |
T |
|
| Q |
213 |
tcatctccacat |
224 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
15610088 |
tcatctgcacat |
15610099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 5827361 - 5827542
Alignment:
| Q |
22 |
aatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttggcgaagttct |
121 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||| ||| ||| |
|
|
| T |
5827361 |
aataggagtctgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttactccagtctgtaagg----tacatgttggcaaagctct |
5827456 |
T |
|
| Q |
122 |
tagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggata |
207 |
Q |
| |
|
| || ||||||||||| | ||| |||| ||||| ||||| |||||||||||| |||||||| |||| || | ||||||| |||||| |
|
|
| T |
5827457 |
tggattgttatcagctatggaaagggttcatcaattacatttgggacctatcgattttgagtttgatgccaaaaaagtgatggata |
5827542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 23040402 - 23040184
Alignment:
| Q |
2 |
tagctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtac |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
23040402 |
tagctttctaatagagtgggaataggagtctgtataaaggatgatacaggcacttttattttggcaaaaactgaatggtttactccagtctgtgaggt-- |
23040305 |
T |
|
| Q |
102 |
atacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtgg |
201 |
Q |
| |
|
||||||||||||| |||| || |||||||| || | |||||||| ||| |||||||||||||||||| ||||||||||||| || | |||||||| |
|
|
| T |
23040304 |
--acatgttggcgaaactcttggattgttatcatctatggaatgggttaatccattacacttgggacctatcgattttgagcttgatgccaaaaaagtgg |
23040207 |
T |
|
| Q |
202 |
tggatagtttttcatctccacat |
224 |
Q |
| |
|
|||| |||||||||||| ||||| |
|
|
| T |
23040206 |
tggacagtttttcatctacacat |
23040184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 13596694 - 13596908
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| | || ||||||||||||||||| |||||||||||||| |||| | |||||||| |
|
|
| T |
13596694 |
agctttctaatagagtgggaatagaagtttgtataagagatga----ggcaattttgttttggcaaaaactgaatggtttactcgagtctgggaggtaca |
13596789 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgc-aagaaaagtgg |
201 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| || || |||||| | |
|
|
| T |
13596790 |
----tgttggcgaagctcttggactgttatcagctttagaatgggttcatcagttacacttgggacctatcgattttgagcttgatgctaaaaaaagttg |
13596885 |
T |
|
| Q |
202 |
tggatagtttttcatctccacat |
224 |
Q |
| |
|
| ||||||||||| ||| ||||| |
|
|
| T |
13596886 |
tagatagtttttcctctgcacat |
13596908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 22910948 - 22911157
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||| |||||||||| |
|
|
| T |
22910948 |
ctttctaatatagtgggaataggagtctgtataagggatgatacatgtacttttgttttggcaaaaactaaatggcttactccagtatgtgaggtaca-- |
22911045 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
||||||||||| || |||| ||||||||||||| |||||||| ||||| ||||| |||||| |||| ||||||||||||| | | ||||||||||| |
|
|
| T |
22911046 |
--tgttggcgaagctcgtagattgttatcagctttggaatgggttcatcaattacatttgggatttatcgattttgagcttgatggcaaaaaagtggtgg |
22911143 |
T |
|
| Q |
205 |
atagtttttcatct |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22911144 |
atagtttttcatct |
22911157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 48859218 - 48859432
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||| ||| |||||| | |
|
|
| T |
48859218 |
ctttctaatagagtgagaataagagtttgtataagggatgatacatgcatttttgttttggcaaaaactgaatgatttactccggtctgtgagg----ca |
48859313 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
||||||||||||| || |||| |||||| |||||||||| || || | ||||||||| |||||||| ||||||||||||| || | ||||||| ||| |
|
|
| T |
48859314 |
catgttggcgaagctc-tagatgattatcaactttagaatgagtttattaattacacttgagacctatcgattttgagcttgatgccaaaaaagtgatgg |
48859412 |
T |
|
| Q |
205 |
atagtttttcatctccacat |
224 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
48859413 |
atattttttcatctgcacat |
48859432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 26754687 - 26754861
Alignment:
| Q |
39 |
gggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttggcgaagttcttagactgttatcagctt |
138 |
Q |
| |
|
||||||||||| |||||| ||||| ||||| ||| ||||||||||| || |||||||||| ||||||||||| |||| || |||||||||||| |
|
|
| T |
26754687 |
gggatgatacatgaacttttattttgacaaaagctgagtggtttactccggtttgtgaggtaca----tgttggcgaagctcttggattgttatcagctt |
26754782 |
T |
|
| Q |
139 |
tagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatagtttttcatc |
217 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||||| ||||| || | ||| |||||| ||||||||||||| |
|
|
| T |
26754783 |
tagaatgggttcatcaattacacttgggacctatcgattttgaacttgatgccaaaaaggtggtgaatagtttttcatc |
26754861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 23586088 - 23586184
Alignment:
| Q |
127 |
tgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtggatagtttttcatctccacat |
224 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||| |||||||||||||||||| ||| || | |||||||||||||| |||||||||| ||||| |
|
|
| T |
23586088 |
tgttatcagctttattatgggtc-attaattacacttgagacctatcaattttgagcatgatgccaaaaaagtggtggataatttttcatctgcacat |
23586184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 3566479 - 3566540
Alignment:
| Q |
163 |
tgggacctatcaattttgagcttgacgcaagaaaagtggtggatagtttttcatctccacat |
224 |
Q |
| |
|
||||||||||| | ||||||||||| | | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
3566479 |
tgggacctatcgaatttgagcttgatgttaaaaaagtggtagatagtttttcatctgcacat |
3566540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 26037145 - 26037053
Alignment:
| Q |
11 |
aatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacat |
103 |
Q |
| |
|
|||||||| |||||| |||| || | |||||||||| | |||||||||| ||||| |||| |||||| |||| |||| | ||||||||||| |
|
|
| T |
26037145 |
aatagagttggaataggagtatgcacaagggatgattctaacacttttgtgttggcgaaaactgaatgatttagtccaatttgtgaggtacat |
26037053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 44021967 - 44022178
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||| |||| |||||| |
|
|
| T |
44021967 |
agctttctaataaagtgggaataggagtttgtataatggatgatacagacatttttgttttggcaaaaactgaatggttaacttcagtttgtgagg---- |
44022062 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| || | ||||||||| |
|
|
| T |
44022063 |
-----gttggcgaagctcttggactgttatcagctttagaatgggttcatcacttacacttgggacctatc-attttgaacttgatgccaaaaaagtggt |
44022156 |
T |
|
| Q |
203 |
ggatagtttttcatctccacat |
224 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
44022157 |
ggatggtttttcatctgcacat |
44022178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 30939948 - 30939731
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||| |||| |||||| |
|
|
| T |
30939948 |
agctttcaaataaagtgggaataagagtttgtataagggatgatacatgcactttcgttttggcaaaaactgaatgatttactcaagtctgtgagg---- |
30939853 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
|| |||||| | ||| |||| | ||||||| | |||||||| ||| ||||| ||||||||| |||||||| ||||||||||||| || | ||||||| | |
|
|
| T |
30939852 |
tatatgttgacaaagctcttttattgttatccgttttagaataggttcatcaattacacttgagacctatcgattttgagcttgatgccaaaaaagtgat |
30939753 |
T |
|
| Q |
203 |
ggatagtttttcatctccacat |
224 |
Q |
| |
|
| | | |||||||||| ||||| |
|
|
| T |
30939752 |
gaacaatttttcatctgcacat |
30939731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 32922849 - 32923053
Alignment:
| Q |
5 |
ctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacata |
104 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |||| | || |
|
|
| T |
32922849 |
ctttataatagactgggaataagagtttgtataagggatgatgtaggcacttttgttttggcaaaaactgaatggtttactccagtttgtgatg----ta |
32922944 |
T |
|
| Q |
105 |
catgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggtgg |
204 |
Q |
| |
|
|||||||||||| | || || |||||||||||||||||| | | ||||| ||||| || | ||||||| ||||||||||||| || | |||||| | | |
|
|
| T |
32922945 |
catgttggcgaaacttttggattgttatcagctttagaattgattcatcaattacattttgaacctatcgattttgagcttgatgccaaaaaagtaatag |
32923044 |
T |
|
| Q |
205 |
atagttttt |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
32923045 |
atagttttt |
32923053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 42131906 - 42132027
Alignment:
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttgagcttgacgcaagaaaagtggt |
202 |
Q |
| |
|
|||||||||||||| |||| || |||||||| |||| |||||||| ||||| ||||||||| |||||||| |||||||||||| || | ||||||||| |
|
|
| T |
42131906 |
tacatgttggcgaaactcttggattgttatcaactttcgaatgggttcatcaattacacttgtgacctatcgattttgagcttggtgccaaaaaagtggt |
42132005 |
T |
|
| Q |
203 |
ggatagtttttcatctccacat |
224 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
42132006 |
ggatagtttttcatctgcacat |
42132027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 43896208 - 43896374
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtaca |
102 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||| ||||| | |||||||||||| |||||| ||||| ||||||||||| | ||| | |
|
|
| T |
43896208 |
agctttctaatagggtggaaatatgaggttgtataagggattatacataaacttttgttttgacaaaaactgaataatttactccagtatgcgag----a |
43896303 |
T |
|
| Q |
103 |
tacatgttggcgaagttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatc |
173 |
Q |
| |
|
|||||||||| ||| |||| | || ||| |||||||||||| || |||| ||||||||||||| |||| |
|
|
| T |
43896304 |
tacatgttggtgaaactcttggcttgatattagctttagaatgagtttatcaattacacttgggacatatc |
43896374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 42131844 - 42131901
Alignment:
| Q |
3 |
agctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgt |
60 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| || |||| ||||| |
|
|
| T |
42131844 |
agctttctaatagagtgggaacatgagtttgtataagggatgatccatacacatttgt |
42131901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 39220710 - 39220787
Alignment:
| Q |
11 |
aatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactcca |
88 |
Q |
| |
|
|||||||| |||||| |||| || |||| |||||||||| |||||||||||| || |||| ||||||||||| |||| |
|
|
| T |
39220710 |
aatagagttggaataggagtatgcataatggatgatacatgcacttttgttttagcgaaaactgaatggtttagtcca |
39220787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 3329 - 3533
Alignment:
| Q |
17 |
gtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttggcgaa |
116 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3329 |
gtggaaataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgagg----tacatgttggcgaa |
3424 |
T |
|
| Q |
117 |
gttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttga-gcttgacgcaagaaaagtggtggatagtttttca |
215 |
Q |
| |
|
| ||| || ||| ||| |||||||||||||| ||||| |||| ||| |||||||| ||||| | |||||| | | ||| |||||||||| ||||||| |
|
|
| T |
3425 |
gctctaggattgtcatcggctttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatgacaaaaaggtggtggataatttttca |
3524 |
T |
|
| Q |
216 |
tctccacat |
224 |
Q |
| |
|
||| ||||| |
|
|
| T |
3525 |
tctgcacat |
3533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 2272 - 2068
Alignment:
| Q |
17 |
gtgggaatatgagtttgtataagggatgatacagacacttttgttttggcaaaaattgaatggtttactccagtcggtgaggtacatacatgttggcgaa |
116 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2272 |
gtggaaataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggt----acatgttggcgaa |
2177 |
T |
|
| Q |
117 |
gttcttagactgttatcagctttagaatgggtccatcacttacacttgggacctatcaattttga-gcttgacgcaagaaaagtggtggatagtttttca |
215 |
Q |
| |
|
| ||| || ||| ||| |||||||||||||| ||||| |||| ||| |||||||| ||||| | |||||| | | ||| |||||||||| ||||||| |
|
|
| T |
2176 |
gctctaggattgtcatcggctttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatgacaaaaaggtggtggataatttttca |
2077 |
T |
|
| Q |
216 |
tctccacat |
224 |
Q |
| |
|
||| ||||| |
|
|
| T |
2076 |
tctgcacat |
2068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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