View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_104 (Length: 237)

Name: NF5400_low_104
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_104
NF5400_low_104
[»] chr8 (3 HSPs)
chr8 (7-237)||(41127809-41128038)
chr8 (184-225)||(3295607-3295648)
chr8 (118-237)||(4718140-4718262)
[»] chr1 (3 HSPs)
chr1 (107-234)||(36772518-36772648)
chr1 (184-237)||(28671206-28671259)
chr1 (140-220)||(27796785-27796864)
[»] chr4 (5 HSPs)
chr4 (118-224)||(26629434-26629543)
chr4 (118-225)||(6840787-6840897)
chr4 (118-234)||(8459508-8459627)
chr4 (181-237)||(6452101-6452157)
chr4 (181-225)||(31311992-31312036)
[»] chr2 (4 HSPs)
chr2 (181-237)||(8778320-8778376)
chr2 (110-224)||(16970875-16970992)
chr2 (118-234)||(6334108-6334227)
chr2 (112-225)||(12262730-12262846)
[»] chr3 (1 HSPs)
chr3 (186-237)||(45647655-45647706)
[»] chr6 (1 HSPs)
chr6 (115-209)||(4058856-4058953)
[»] chr5 (3 HSPs)
chr5 (181-234)||(4330080-4330133)
chr5 (181-225)||(19000801-19000845)
chr5 (118-234)||(34578302-34578420)
[»] scaffold0223 (1 HSPs)
scaffold0223 (183-235)||(28176-28228)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 41127809 - 41128038
Alignment:
Q  7 attatgatcatcatcataaacatgtcattgctaaaatcttaattctttagcacatctaataaaataaagaggtaattggtgtttgttgattgtttttgtg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41127809 attatgatcatcatcataaacatgtcattgctaaaatcttaattctttagcacatctaataaaataaagaggtaattggtgttttttgattgtttttgtg 41127908  T
Q  107 atatttttaaaggttaattaagtaaatgtctccataaatattaaaattttgttttttaatccttacaaaaaatacacactttttagtctctgtaaaattt 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  41127909 atatttttaaaggttaattaagtaaatatctccataaatattaaaattttg-tttttaatccttactaaaaatacacactttttagtctctgtaaaattt 41128007  T
Q  207 tccgtttgcatttttagtctttgtaaaaaat 237  Q
    || ||||||||||||| ||||||||||||||    
T  41128008 tcggtttgcatttttaatctttgtaaaaaat 41128038  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 3295607 - 3295648
Alignment:
Q  184 actttttagtctctgtaaaattttccgtttgcatttttagtc 225  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  3295607 actttttagtctctataaaattttccgttagtatttttagtc 3295648  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 4718262 - 4718140
Alignment:
Q  118 ggttaattaagtaaatg-tctccataaatattaa-aattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgttt 213  Q
    ||||||||||||||||| || | ||||||||| | |||||||||||| | ||| ||||||| | |  |||||||||||||  || ||||||||||| |      
T  4718262 ggttaattaagtaaatggtccctataaatattcataattttgttttt-agtccctacaaaataaaatcacactttttagttcctataaaattttccatca 4718164  T
Q  214 gcatttttagtctttgtaaaaaat 237  Q
    ||||||||||||  ||||||||||    
T  4718163 gcatttttagtccctgtaaaaaat 4718140  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 36772648 - 36772518
Alignment:
Q  107 atatttttaaaggttaattaagtaaatg-tctccataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaa 203  Q
    |||||||| | ||||||||||||||||| |||| | ||||||| | | |||  |||||||||||||||||| | |  ||||||||||||| ||| |||||    
T  36772648 atattttttagggttaattaagtaaatggtctctaaaaatattcagaattttatttttaatccttacaaaataaaatcacactttttagtttctataaaa 36772549  T
Q  204 ttttccgtttgcatttttagtctttgtaaaa 234  Q
    |||||  |  |||||||||||| || |||||    
T  36772548 ttttctatcagcatttttagtccttataaaa 36772518  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 28671206 - 28671259
Alignment:
Q  184 actttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaaaat 237  Q
    ||||| ||||| |||||||||||||| || | |||||||||| |||||||||||    
T  28671206 actttgtagtccctgtaaaattttccattggtatttttagtccttgtaaaaaat 28671259  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 27796864 - 27796785
Alignment:
Q  140 ataaatattaaaattttgttttttaatccttacaaaaaatacacactttttagtctctgtaaaattttccgtttgcatttt 220  Q
    ||||||||| ||| |||  |||||| || ||||||||||||  |||||||||||||  ||||||||||||| | |||||||    
T  27796864 ataaatatttaaaatttcatttttagtctttacaaaaaatat-cactttttagtctaagtaaaattttccgatagcatttt 27796785  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 26629434 - 26629543
Alignment:
Q  118 ggttaattaagtaaatg-tctccataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgtttg 214  Q
    ||||||||||||||||| || | ||||||||| ||| |||  |||||| ||| ||||||| | |  |||||||||||||| |||| |||||||||||  |    
T  26629434 ggttaattaagtaaatggtccctataaatattcaaaatttcatttttagtccctacaaaataaaatcacactttttagtccctgtgaaattttccgtcag 26629533  T
Q  215 catttttagt 224  Q
    ||||||||||    
T  26629534 catttttagt 26629543  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 6840787 - 6840897
Alignment:
Q  118 ggttaattaagtaaatg-tctccataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgtttg 214  Q
    ||||||||||||||||| || ||||||||||| ||| |||  | |||| ||||||||||| | |  | |||||||||||| ||||||||  || ||||||    
T  6840787 ggttaattaagtaaatggtccccataaatattcaaaatttcatatttagtccttacaaaataaaaccgcactttttagtccctgtaaaaaatttcgtttg 6840886  T
Q  215 catttttagtc 225  Q
     ||||||||||    
T  6840887 tatttttagtc 6840897  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 8459627 - 8459508
Alignment:
Q  118 ggttaattaagtaaatg-tctccataaatattaa-aattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgttt 213  Q
    ||||||||||||||||| || | ||||||||| | |||||||||||| ||||| ||||||| | |  |||||||||||||| || ||| ||||||| |      
T  8459627 ggttaattaagtaaatggtccctataaatattcagaattttgttttt-aatccctacaaaataaaatcacactttttagtccctataagattttccatca 8459529  T
Q  214 gcatttttagtctttgtaaaa 234  Q
    |||||||||||| || |||||    
T  8459528 gcatttttagtccttataaaa 8459508  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 6452101 - 6452157
Alignment:
Q  181 cacactttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaaaat 237  Q
    ||||||||||||||| | ||||||||||| |  ||||||||||||||  ||||||||    
T  6452101 cacactttttagtctttataaaattttccatcagcatttttagtcttcataaaaaat 6452157  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 31311992 - 31312036
Alignment:
Q  181 cacactttttagtctctgtaaaattttccgtttgcatttttagtc 225  Q
    |||||||||||||| || ||||||||||||||||  |||||||||    
T  31311992 cacactttttagtccctataaaattttccgtttgtgtttttagtc 31312036  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 8778320 - 8778376
Alignment:
Q  181 cacactttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaaaat 237  Q
    |||||||||||||| ||||||||| ||||||   ||||||||||| |||||||||||    
T  8778320 cacactttttagtccctgtaaaatattccgtcaacatttttagtccttgtaaaaaat 8778376  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 16970875 - 16970992
Alignment:
Q  110 tttttaaaggttaattaagtaaatg-tctccataaatattaa-aattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaatt 205  Q
    ||||||| ||||||||||||||||| | || ||||||||| | |||||||||||| | ||| ||||||| | |  |||| |||||||||| | |||||||    
T  16970875 tttttaagggttaattaagtaaatggtttctataaatatttagaattttgttttt-agtccctacaaaataaaatcacattttttagtctttataaaatt 16970973  T
Q  206 ttccgtttgcatttttagt 224  Q
    ||||||  |||||||||||    
T  16970974 ttccgtcagcatttttagt 16970992  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 6334108 - 6334227
Alignment:
Q  118 ggttaattaagtaaatg-tctccataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgtttg 214  Q
    ||||||||||||||||| ||   ||||||||| | | |||  |||||| ||||||||||| | |  |||||||||||||| || ||| |||||||||  |    
T  6334108 ggttaattaagtaaatggtccttataaatattcagaattttatttttagtccttacaaaataaaatcacactttttagtccctataagattttccgtcag 6334207  T
Q  215 catttttagtctttgtaaaa 234  Q
    ||||||||||| || |||||    
T  6334208 catttttagtccttataaaa 6334227  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 12262730 - 12262846
Alignment:
Q  112 tttaaaggttaattaagtaaatg-tctccataaatattaa-aattttgttttttaatccttacaaaa---aatacacactttttagtctctgtaaaattt 206  Q
    ||||| ||||||||||||||||| || | ||||||||| | |||||||||||| ||||| |||||||   |||| ||||||||||||| || ||||| ||    
T  12262730 tttaagggttaattaagtaaatggtccctataaatatttagaattttgttttt-aatccctacaaaataaaata-acactttttagtccctataaaaatt 12262827  T
Q  207 tccgtttgcatttttagtc 225  Q
    | |||  ||||||||||||    
T  12262828 ttcgtcagcatttttagtc 12262846  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 45647655 - 45647706
Alignment:
Q  186 tttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaaaat 237  Q
    ||||||||| || |||||||||||||| ||||||||||||| ||| ||||||    
T  45647655 tttttagtccctataaaattttccgttagcatttttagtctctgtcaaaaat 45647706  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 4058856 - 4058953
Alignment:
Q  115 aaaggttaattaagtaaatg-tctccataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttcc 209  Q
    |||||||||||||||||||| |||| ||||||||| | | |||  |||||| ||| ||||||| | |  |||||||||||||| || |||||||||||    
T  4058856 aaaggttaattaagtaaatggtctctataaatatttagaattttatttttagtccctacaaaataaaatcacactttttagtccctttaaaattttcc 4058953  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 4330133 - 4330080
Alignment:
Q  181 cacactttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaa 234  Q
    ||||||||||||||  |||||| ||||||||  |||||||||||| ||||||||    
T  4330133 cacactttttagtccatgtaaatttttccgtcggcatttttagtccttgtaaaa 4330080  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19000845 - 19000801
Alignment:
Q  181 cacactttttagtctctgtaaaattttccgtttgcatttttagtc 225  Q
    |||||||||||||| || |||||||||||||| | ||||||||||    
T  19000845 cacactttttagtccctataaaattttccgttagtatttttagtc 19000801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 34578302 - 34578420
Alignment:
Q  118 ggttaattaagtaaatgtctcc-ataaatattaaaattttgttttttaatccttacaaaaaata--cacactttttagtctctgtaaaattttccgtttg 214  Q
    |||||||||||||||||  ||| ||||||||| | | ||| ||||||||||| || |||| | |  |||||||||||||| || ||||||||||| |  |    
T  34578302 ggttaattaagtaaatggttcctataaatattcagaattt-ttttttaatccctataaaataaaatcacactttttagtccctataaaattttccatcag 34578400  T
Q  215 catttttagtctttgtaaaa 234  Q
    ||||||||||| || |||||    
T  34578401 catttttagtccttataaaa 34578420  T

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Target: scaffold0223 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 28176 - 28228
Alignment:
Q  183 cactttttagtctctgtaaaattttccgtttgcatttttagtctttgtaaaaa 235  Q
    |||||||||||| ||||||||||||||||   ||||||||||| || ||||||    
T  28176 cactttttagtccctgtaaaattttccgtcatcatttttagtccttataaaaa 28228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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