View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_105 (Length: 237)
Name: NF5400_low_105
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7341882 - 7342059
Alignment:
| Q |
1 |
tccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttctttctcacttcatataga--atcaaggtgcaaatgcaatgc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7341882 |
tccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttctttctcacttcatatagataatcaaggtgcaaatgcaatgc |
7341981 |
T |
|
| Q |
99 |
ttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgatta-ttcatggttgattaata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7341982 |
ttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgattatttcatggttgattaata |
7342059 |
T |
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