View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_113 (Length: 234)
Name: NF5400_low_113
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_113 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9384818 - 9384592
Alignment:
| Q |
1 |
attgagattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384818 |
attgagattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttg |
9384719 |
T |
|
| Q |
101 |
aatatgttagctcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384718 |
aatatgttaactcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaac |
9384619 |
T |
|
| Q |
201 |
gagagcttcatgttttagaattatatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9384618 |
gagagcttcatgttttagaattatatt |
9384592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 31947900 - 31947700
Alignment:
| Q |
5 |
agattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaata |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31947900 |
agattgtcagagacattgaatgttaatgttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaata |
31947801 |
T |
|
| Q |
105 |
tgttagctcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaatgaga |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
31947800 |
tgttagctcattaggctaacataggtagagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtaaaattcaatccatgtttgaatgaga |
31947701 |
T |
|
| Q |
205 |
g |
205 |
Q |
| |
|
| |
|
|
| T |
31947700 |
g |
31947700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 31455574 - 31455655
Alignment:
| Q |
9 |
tgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagt |
90 |
Q |
| |
|
|||||||||||||||||||||||||| | | | ||||||||||| |||||||| | ||||||||| ||| ||||||||| |
|
|
| T |
31455574 |
tgttagagacattgaatgttaatgtttgtggacttgaaggtggattggattgcatttatagatgtttagtacgaaatagagt |
31455655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University