View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_118 (Length: 229)
Name: NF5400_low_118
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_118 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 16737057 - 16737161
Alignment:
| Q |
13 |
aagaatatgagtatcttggtggttttgatgcatgcaaacacaaccttcatccaaggatcgtttggtcaaaagatgcaatccacattagaaggatttgtta |
112 |
Q |
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| T |
16737057 |
aagagtatgagtatctaggtggttttcatgcatgcaaacacaatcttcatgcaaggatcatttggtcaaaggatgcaatccacattagaagaatttgtta |
16737156 |
T |
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| Q |
113 |
aagtg |
117 |
Q |
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| T |
16737157 |
aagtg |
16737161 |
T |
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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 16737230 - 16737307
Alignment:
| Q |
135 |
gaaatggattctatgaactatcattttcaaacttggaggttgttaggagagttcattccattggttcttggaatctaa |
212 |
Q |
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| T |
16737230 |
gaaaaggattctatgaactatcattttcaaacttggaggttgttaggagagttcatttcattggttcgtggaatctaa |
16737307 |
T |
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