View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_121 (Length: 223)
Name: NF5400_low_121
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_121 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 646158 - 645968
Alignment:
| Q |
16 |
tactcaaaaacaaccaaacatgtcataatcaaatatggccactttggaaccaaacatacaccaaatgagaatgagtatttgatactgacattaactttaa |
115 |
Q |
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| T |
646158 |
tactcaaaaacaaccaaacatgtcataatcaaatatgaccactttggaaccaaacatacactaaacgagaatgagtatttgatactaacattaactttaa |
646059 |
T |
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| Q |
116 |
ggcgtaaaatatggcacttcttaggaacgaagtttccgaagtcaacaacatccttgatcttattatcattggcatcttcaagatacaaatc |
206 |
Q |
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| T |
646058 |
ggcgtaaaatatggcacttcttaggaacgaagtttccgaaatcaacaacatccttgatcttattatcattggcatcttcaagatacaaatc |
645968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 683815 - 683718
Alignment:
| Q |
107 |
taactttaaggcgtaaaatatggcacttcttaggaacgaagtttccgaagtcaacaacatccttgatcttattatcattggcatcttcaagatacaaa |
204 |
Q |
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| T |
683815 |
taacattaaggcgtaaaatgtggcacttgttaggaatgaaatttttgaaatcaacaacgttcttgatcttattatcactaacatcttcaagaaacaaa |
683718 |
T |
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