View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_123 (Length: 218)

Name: NF5400_low_123
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_123
NF5400_low_123
[»] chr7 (2 HSPs)
chr7 (14-203)||(18939903-18940091)
chr7 (16-149)||(11504367-11504500)
[»] chr2 (1 HSPs)
chr2 (14-144)||(7828286-7828416)
[»] chr3 (3 HSPs)
chr3 (54-148)||(52310863-52310956)
chr3 (57-148)||(53689941-53690031)
chr3 (104-149)||(31688748-31688793)
[»] chr8 (2 HSPs)
chr8 (57-149)||(43227080-43227172)
chr8 (100-148)||(42313037-42313085)
[»] scaffold0003 (2 HSPs)
scaffold0003 (57-149)||(35584-35676)
scaffold0003 (57-149)||(42255-42347)
[»] chr6 (3 HSPs)
chr6 (57-149)||(27445011-27445103)
chr6 (100-148)||(20909922-20909970)
chr6 (100-148)||(20924370-20924418)
[»] chr1 (1 HSPs)
chr1 (100-148)||(41326817-41326864)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 18939903 - 18940091
Alignment:
Q  14 aagaaaattcaaaaagcaagtgaattgttttggccttatggcctctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccata 113  Q
    ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  18939903 aagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattttcaagctcactttgaaacaccgaactcaaattatttgccatg 18940002  T
Q  114 attagaacaaaaaccaaaacaaccaccataagtaacnnnnnnnnngtgaaataaagagcttaacatcatgaacaagcacaccataaaaat 203  Q
    ||||||||||||||||||||||||||||||||||||         |||||||| |||||||||||||||||| || ||||||||||||||    
T  18940003 attagaacaaaaaccaaaacaaccaccataagtaac-aaaaaaaagtgaaatacagagcttaacatcatgaaaaaacacaccataaaaat 18940091  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 11504500 - 11504367
Alignment:
Q  16 gaaaattcaaaaagcaagtgaattgttttggccttatggcctctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataat 115  Q
    |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||    
T  11504500 gaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttcaagctcactttgaaacactgaactcaaattatttgccatgat 11504401  T
Q  116 tagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    |||||||||||||| |||||||||||||||||||    
T  11504400 tagaacaaaaaccataacaaccaccataagtaac 11504367  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 7828286 - 7828416
Alignment:
Q  14 aagaaaattcaaaaagcaagtgaattgttttggccttatggcctctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccata 113  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| ||||||  ||||| ||||||||||||||     
T  7828286 aagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattgtcaagctcacttcgaaacattgaactcaaattatttgccatg 7828385  T
Q  114 attagaacaaaaaccaaaacaaccaccataa 144  Q
    |||||||||||||||||||||||||||||||    
T  7828386 attagaacaaaaaccaaaacaaccaccataa 7828416  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 52310863 - 52310956
Alignment:
Q  54 gcctctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  52310863 gcctctttctatagattttcaagctcactttgaaacaccaaa-tcaaattatttgtcatgattagaacaaaaaccaaaacaaccaccataagtaa 52310956  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 53690031 - 53689941
Alignment:
Q  57 tctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    |||||||||||||||||||||||||||||||||||| || |  ||||||||  ||| ||||||||||||||||||||| |||||||| ||||    
T  53690031 tctttctatagattttcaagctcactttgaaacacc-aaatctaattatttttcatgattagaacaaaaaccaaaacagccaccataggtaa 53689941  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 31688793 - 31688748
Alignment:
Q  104 atttgccataattagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    |||| |||| ||||||||||||||||||||||||  ||||||||||    
T  31688793 attttccatgattagaacaaaaaccaaaacaacctacataagtaac 31688748  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 43227172 - 43227080
Alignment:
Q  57 tctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    |||||||||| ||| |||||||||||||| |||||| || | |||||||||||||| || |||||||||||||||||||||||||||||||||    
T  43227172 tctttctatatattctcaagctcactttgtaacaccaaattcaaattatttgccatgataagaacaaaaaccaaaacaaccaccataagtaac 43227080  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 42313037 - 42313085
Alignment:
Q  100 aattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42313037 aattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaa 42313085  T

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Target: scaffold0003 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 35584 - 35676
Alignment:
Q  57 tctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    ||||| ||||||||||||||||||||||| |||||  |||| |||| |||| |||| ||||||||||||||||||||||||  ||||||||||    
T  35584 tctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaacctacataagtaac 35676  T

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Target: scaffold0003; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 42255 - 42347
Alignment:
Q  57 tctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    ||||| ||||||||||||||||||||||| |||||  |||| |||| |||| |||| ||||||||||||||||||||||||  ||||||||||    
T  42255 tctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaacctacataagtaac 42347  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 27445103 - 27445011
Alignment:
Q  57 tctttctatagattttcaagctcactttgaaacaccgaacttaaattatttgccataattagaacaaaaaccaaaacaaccaccataagtaac 149  Q
    ||||| ||||||||||||||||||||||| |||||  |||| |||| |||| |||| ||||||||||||||||||||||||  ||||||||||    
T  27445103 tctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaacctacataagtaac 27445011  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 20909922 - 20909970
Alignment:
Q  100 aattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20909922 aattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaa 20909970  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 20924370 - 20924418
Alignment:
Q  100 aattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20924370 aattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaa 20924418  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 41326817 - 41326864
Alignment:
Q  100 aattatttgccataattagaacaaaaaccaaaacaaccaccataagtaa 148  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||    
T  41326817 aattatttgccatgaatagaacaaaa-ccaaaacaacgaccataagtaa 41326864  T

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