View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_127 (Length: 217)
Name: NF5400_low_127
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 42837381 - 42837188
Alignment:
| Q |
13 |
taaaggaggtgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgagagaagaaacaaaattaggtataacagattgtaca |
112 |
Q |
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| T |
42837381 |
taaaggaggtgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgagagaagaaacaaaattaggtataacagattgtaca |
42837282 |
T |
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| Q |
113 |
gaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccatctccattgatgatg |
206 |
Q |
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| T |
42837281 |
gaagaaagcatgtacatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccatctccattgatgatg |
42837188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 43914938 - 43915079
Alignment:
| Q |
20 |
ggtgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgagagaagaaacaaaattaggtataacagattgtacagaagaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
43914938 |
ggtgtaggagcaaaaggacggtggttgaaagaagagagaactttcagagaaaggtcaagagaagaaacaagattaggtataacggattgtacagaagaaa |
43915037 |
T |
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| Q |
120 |
gcatgtccatgtgcgacttgtgttgagtttctatgcgagctt |
161 |
Q |
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| T |
43915038 |
gcatgtccatgtgtgacttgtgttgggtttctatgcgagctt |
43915079 |
T |
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