View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_129 (Length: 214)
Name: NF5400_low_129
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 119461 - 119542
Alignment:
| Q |
119 |
agtaggtttgtttctcgttacagtagtttgtttcatcttcttcaagcaaatctgaaattaacatagacgagagtttgtttgt |
200 |
Q |
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| T |
119461 |
agtaggtttgtttctcgttacagtagtttgtttcatcttcttcaagcaaatctgaaattaacatagacgagagtttgtttgt |
119542 |
T |
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 119357 - 119432
Alignment:
| Q |
15 |
cataggtataaataaataatatcctaaagagacagcgttccgagattaaggatagccaacggccacaaactgcccc |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
119357 |
cataggtataaataaataatatcctaaagagacagcgttcccagattaaggatagccaacggccacaaactgcccc |
119432 |
T |
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