View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_131 (Length: 208)
Name: NF5400_low_131
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_131 |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 20425077 - 20424888
Alignment:
| Q |
1 |
aaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaagga |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20425077 |
aaaacctctttagaaacatcgacattggaagattctaaaccacaccaatatagtggatcttgaata-tagtccaagtctgttacgacatcactccaagga |
20424979 |
T |
|
| Q |
101 |
ccaacaatgtgcatatcaggaaatttgatactatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtg |
191 |
Q |
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| T |
20424978 |
ccaacgatgcgcatatcaggaaatttgctactatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtg |
20424888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 43805364 - 43805448
Alignment:
| Q |
37 |
aaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaa |
122 |
Q |
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| T |
43805364 |
aaaccataccaagacgggggatattgaata-taatccaagtctgtcacagcgtcactccaaggaccaacaatgcgcatatcaggaa |
43805448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 8410862 - 8411012
Alignment:
| Q |
1 |
aaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaagga |
100 |
Q |
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| T |
8410862 |
aaaacctctttggaaacctcgacattagaggaacccaaaccacaccaagatggtggttcttgaata-tagtccaaatatgttacgacgacacttcaggga |
8410960 |
T |
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| Q |
101 |
ccaacaatgtgcatatcaggaaatttgatactatgttggtcttctctttgtt |
152 |
Q |
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| T |
8410961 |
ccaacaatgtgcatatcaagaaatttactactttgttggatttctctttgtt |
8411012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12737327 - 12737207
Alignment:
| Q |
1 |
aaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaagga |
100 |
Q |
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||||| ||||||||||| |||||||||||| ||||||| ||||| |||| |||||||||||| || || ||||| || || || |||||||||||| |
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| T |
12737327 |
aaaacatctttagaaaccatgacattggaagaacataaaccataccaagatgggggatcttgaata-taatctaagtccgtcacaacgtcactccaagga |
12737229 |
T |
|
| Q |
101 |
ccaacaatgtgcatatcaggaa |
122 |
Q |
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||||| ||| |||||||||||| |
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| T |
12737228 |
ccaacgatgcgcatatcaggaa |
12737207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 10866051 - 10865937
Alignment:
| Q |
37 |
aaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgt |
136 |
Q |
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|||||| ||||| | || ||||| |||||| || ||||||||||| || | ||||||||||||||||||||| |||||| ||| |||| | | |||||| |
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| T |
10866051 |
aaaccataccaagacgggggatcctgaata-taatccaagtctgtgactgcgtcactccaaggaccaacaatgcgcatatgagg-aattcgttgctatgt |
10865954 |
T |
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| Q |
137 |
tggtcttctctttgttt |
153 |
Q |
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| T |
10865953 |
ttgtcttcactttgttt |
10865937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 276033 - 276152
Alignment:
| Q |
21 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
120 |
Q |
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|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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| T |
276033 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
276131 |
T |
|
| Q |
121 |
aaatttgatactatgttggtc |
141 |
Q |
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| T |
276132 |
aagtttgttgctctgttggtc |
276152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 639816 - 639697
Alignment:
| Q |
21 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
120 |
Q |
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|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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| T |
639816 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
639718 |
T |
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| Q |
121 |
aaatttgatactatgttggtc |
141 |
Q |
| |
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| T |
639717 |
aagtttgttgctctgttggtc |
639697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 825622 - 825503
Alignment:
| Q |
21 |
gacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcagg |
120 |
Q |
| |
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|||||||||||| ||||||| ||||| |||| ||||||||| || || || ||||| || || || |||||||||||||||| ||| ||||||||| |
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| T |
825622 |
gacattggaagaacataaaccataccaagatgggggatcttgatta-taatctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcaga |
825524 |
T |
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| Q |
121 |
aaatttgatactatgttggtc |
141 |
Q |
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| T |
825523 |
aagtttgttgctctgttggtc |
825503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 20424946 - 20424806
Alignment:
| Q |
1 |
aaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaagga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||||| || ||||| |||||||| || | |||||||||| | |
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| T |
20424946 |
aaaacctctttagaaaccatgacattggaagaacctaaaccataccaagatgggggatcttgatta-tagtctaagtctgtcacagcgtcactccaagaa |
20424848 |
T |
|
| Q |
101 |
ccaacaatgtgcatatcaggaaatttgatactatgttggtct |
142 |
Q |
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||||| ||| ||||||||||||||||| | || ||||||||| |
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| T |
20424847 |
ccaactatgcgcatatcaggaaatttgttgctttgttggtct |
20424806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 5430598 - 5430544
Alignment:
| Q |
87 |
catcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc |
141 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| || ||||||||| |
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| T |
5430598 |
catcactccaaggaccaacaatatgcatatccggaaatttgttatgatgttggtc |
5430544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4371 - 4231
Alignment:
| Q |
1 |
aaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaagga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| ||||| |||| | |||||| || ||| || |||| | | || || |||||||||| | |
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| T |
4371 |
aaaacctctttagaaaccatgacattggaagaacctaaaccataccaagatggggaatcttg-attataatctaagtttatcacaacgtcactccaagta |
4273 |
T |
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| Q |
101 |
ccaacaatgtgcatatcaggaaatttgatactatgttggtct |
142 |
Q |
| |
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||||| ||| ||||||||||||||| | | || ||||||||| |
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|
| T |
4272 |
ccaacgatgcgcatatcaggaaattcgttgctttgttggtct |
4231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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