View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_15 (Length: 541)
Name: NF5400_low_15
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 10103186 - 10103450
Alignment:
| Q |
18 |
aatataagagtgataaatggttcgaccattgaggataatacgttttgtttcacggtacactaccgccgtgtgaaaaatagagaggtatgaattagattca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10103186 |
aatataagagtgataaatggttcgaccattgaggataatacgttttgtttcacggtacactaccgccgtgtgaaaaatagagaggtatgaattagattca |
10103285 |
T |
|
| Q |
118 |
ttctagattaattaacacatcttatgtaaaagaaattatatacacttatatatgttgttgcttctctatattataggatgttgaagttctcaaagaaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10103286 |
ttctagattaattaacacatcttatgtaaaagaaattatatacacttatatatgttgttgcttctctatattataggatgttgaagttctcaaagaaatt |
10103385 |
T |
|
| Q |
218 |
gttgagtctattatgaaagattaccctgattttctcatatcaggagggaaagaggtacaataatt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10103386 |
gttgagtctattatgaaagattaccctgattttctcatatcaggagggaaagaggtacaataatt |
10103450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 406 - 533
Target Start/End: Original strand, 10103642 - 10103769
Alignment:
| Q |
406 |
tcttaaacttaacataagtttaatgttttatattagataatggagatacgcccaaatgtaaactggaataaaggtgatgctctaatgtattttcttgaca |
505 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10103642 |
tcttaaacttaacataagttgaatgttttatattagattatggagatacgcccaaatgtgaactggaataaaggcgatgctctaatgtattttcttgaca |
10103741 |
T |
|
| Q |
506 |
ctcttggatataacacctttgatgatgt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10103742 |
ctcttggatataacacctttgatgatgt |
10103769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 10103515 - 10103559
Alignment:
| Q |
362 |
tgacagagaaaatgaaatatctctcttatttatctgtctttaaat |
406 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
10103515 |
tgacggagaaaatgaaatctctttcttatttatcagtctttaaat |
10103559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University