View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_17 (Length: 514)
Name: NF5400_low_17
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_17 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 40519927 - 40519429
Alignment:
| Q |
16 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaacaaaacatctcaaaaccatgtgaaaattatttttggtaatataaagc |
115 |
Q |
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| T |
40519927 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaacaaa-catctcaaaaccatgtgaatattttttttggtaatataaagc |
40519829 |
T |
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| Q |
116 |
aaacacatgttgattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcct |
215 |
Q |
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| T |
40519828 |
aaacacatgttgattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcct |
40519729 |
T |
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| Q |
216 |
cttaattgttaaaactaacaatgcagaggataatataacaaaacaaaaa-tcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaa |
314 |
Q |
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| T |
40519728 |
cttaattgttaaaactaacaatgcagaggataatataacaaaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaa |
40519629 |
T |
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| Q |
315 |
agtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgtactagggt |
414 |
Q |
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| T |
40519628 |
agtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtgaccatctggtatataaatgtaatagggt |
40519529 |
T |
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| Q |
415 |
gtcattttgatttgcaggattttgagaatgaagaattggtgagaatacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagt |
514 |
Q |
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| T |
40519528 |
gtcattttgatttgcaggattttgagaatgaagaattggtgagattacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagt |
40519429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 151 - 417
Target Start/End: Original strand, 41781857 - 41782118
Alignment:
| Q |
151 |
aaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataat |
249 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
41781857 |
aaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctcttaattgttaaaactaacaatgcaagaggctaat |
41781956 |
T |
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| Q |
250 |
ataacaaaacaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgaga |
349 |
Q |
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| T |
41781957 |
atga--aaataaaaattcgaatacaaagtcatcgcaatgttaa----tatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgaga |
41782050 |
T |
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| Q |
350 |
ccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgtactagggtgtc |
417 |
Q |
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| T |
41782051 |
ccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc |
41782118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 40508463 - 40508375
Alignment:
| Q |
424 |
atttgcaggattttgagaatgaagaattggtgagaatacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggcta |
512 |
Q |
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| T |
40508463 |
atttgcaggattttgagaatgaagaattggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggcta |
40508375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 40510680 - 40510566
Alignment:
| Q |
293 |
ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatc |
392 |
Q |
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| T |
40510680 |
ttaatgtgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaataattgtcacattaaattgttgatgtgaccatc |
40510581 |
T |
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| Q |
393 |
tggtatataactgta |
407 |
Q |
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|||| |||| |||| |
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| T |
40510580 |
gggtagataagtgta |
40510566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 40510933 - 40510881
Alignment:
| Q |
16 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaa |
68 |
Q |
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| T |
40510933 |
atgatgaaattatacaatgagtcatgctgctcaatttgcttacaggtcagaaa |
40510881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 178 - 419
Target Start/End: Complemental strand, 18163795 - 18163560
Alignment:
| Q |
178 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatat-aacaaaacaaaaatcccaatacaaa |
276 |
Q |
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| T |
18163795 |
agttttgagctataaaatttttaacttttttctagcctcttagttgttaaaactaacaatgcagaggctaatatgaacaaaa---aagtcctaaaacaaa |
18163699 |
T |
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| Q |
277 |
gtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaat |
376 |
Q |
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| T |
18163698 |
gtcatcaaaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaat |
18163603 |
T |
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| Q |
377 |
tgttgatgtggccatctggtatataactgtactagggtgtcat |
419 |
Q |
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| T |
18163602 |
tgttgatgtggccatctggtatataaatttattagggtgtcat |
18163560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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