View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_18 (Length: 513)
Name: NF5400_low_18
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 334 - 509
Target Start/End: Complemental strand, 3551144 - 3550969
Alignment:
| Q |
334 |
gaaaacaatataatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatgtatgcataa |
433 |
Q |
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| T |
3551144 |
gaaaacaataaaatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatgtatgcataa |
3551045 |
T |
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| Q |
434 |
aggattaatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattc |
509 |
Q |
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| T |
3551044 |
aggattaatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattc |
3550969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 329 - 448
Target Start/End: Complemental strand, 3572825 - 3572706
Alignment:
| Q |
329 |
aggaggaaaacaatataatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatgtatg |
428 |
Q |
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| T |
3572825 |
aggaggaaaagaataagatgttagggatattacaaaagatagaaggtgaaaggaaaattgaaaagcaaaatcaattgttctgattttgattacatgtatg |
3572726 |
T |
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| Q |
429 |
cataaaggattaatcctcct |
448 |
Q |
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| T |
3572725 |
cataaaggactaatcctcct |
3572706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 513
Target Start/End: Complemental strand, 3574211 - 3574039
Alignment:
| Q |
346 |
atgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgtt------ctgggtttgattacatgtatgcataaaggatt |
439 |
Q |
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| T |
3574211 |
atgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgtttctgcgtttgattacatgtatgcctgaaggatt |
3574112 |
T |
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| Q |
440 |
aatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcataa |
513 |
Q |
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| T |
3574111 |
aattctgctgccatcatagtctgaata-tgtatttggttattttaaattgcaatggaataacgtgaattcataa |
3574039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 448
Target Start/End: Complemental strand, 3570791 - 3570668
Alignment:
| Q |
325 |
atggaggaggaaaacaatataatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatg |
424 |
Q |
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|||| ||||||||| |||| ||||||| ||||||||||| ||||||| |||||| |||||| |||||||||| | ||||||| |||||||||||| |
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| T |
3570791 |
atggcggaggaaaagaataagatgttggagatattacacaagatagaaggtgaaatgaaaattgaaaagcaagatcagttgttctgtttttgattacatg |
3570692 |
T |
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| Q |
425 |
tatgcataaaggattaatcctcct |
448 |
Q |
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| T |
3570691 |
aatgcataaaggacttatcctcct |
3570668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 1685501 - 1685428
Alignment:
| Q |
325 |
atggaggaggaaaacaatataatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaaga |
398 |
Q |
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|||||| ||||| | |||| ||||||| ||||||||||| ||||||| |||||||||||||| |||||||||| |
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| T |
1685501 |
atggagaaggaagagaataagatgttggagatattacacaagatagaaggtgaaaggaaaatcgaaaagcaaga |
1685428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 3560171 - 3560051
Alignment:
| Q |
325 |
atggaggaggaaaacaatataatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatg |
424 |
Q |
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|||||||||||||| |||| ||||||| |||| |||||| ||||||| || |||||| |||| ||||||||| || | | || |||||||||||| |
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| T |
3560171 |
atggaggaggaaaagaataagatgttggagatactacacaagatagaaggtaaaaggacaatcgcaaagcaagatcaagggct-tgcttttgattacatg |
3560073 |
T |
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| Q |
425 |
tatgcataaaggattaatcctc |
446 |
Q |
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||||||||||||| |||||||| |
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| T |
3560072 |
tatgcataaaggactaatcctc |
3560051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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