View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_2 (Length: 728)
Name: NF5400_low_2
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 31811332 - 31810943
Alignment:
| Q |
18 |
cataggacacaaaaattgattaaaatcatatagcacctttcctatattaattaccttggaaggcttcaacctttcttcaaaccatgtcttaacttcttca |
117 |
Q |
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| T |
31811332 |
cataagacacaaaaattgattaaaatcatatagcacctttcctatattaattaccttggaaggcttcaacctttcttcaaaccatgtcttaacttcttca |
31811233 |
T |
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| Q |
118 |
acctgcaagtacaacacatagggaaaagtgaaaaccggatggcattcatattatcagtatcaagaacttaaggaacggagattggacctttttcttgtga |
217 |
Q |
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| T |
31811232 |
acctgcaagtacaacacatagggaaaagtgaaaacaggatggcattcatattatcagtatcaagaacttaaggaacggagatttgacctttttcttgtga |
31811133 |
T |
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| Q |
218 |
acagcaagctcttccagcgaatggggcttgtatttatcaacccatagctcttctgcagtgctcctttgagtacctaatgcatccattcagcactaatgat |
317 |
Q |
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| T |
31811132 |
acagcaagctcttccagcgaatggggcttgtatttatcaacccatagctcttctgcagtgctcctttgagtacctaatgcatccatttagcactaatgat |
31811033 |
T |
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| Q |
318 |
ttacgagatcaaggaacaaagataaagattcagaggcacgataaatggagagggaaattggcacaaagtaagcttttaaatttgttttaaca |
409 |
Q |
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| T |
31811032 |
ttatgagatcaaggaacaaagataaagatttagaggcacgataaatg--gagggaaattggcacaaagtaagcttttaaatttgttttaaca |
31810943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 399 - 728
Target Start/End: Complemental strand, 31810928 - 31810599
Alignment:
| Q |
399 |
ttgttttaacatattgcttgaaggactcgggcctgtttaacaaatctttagggttccaacaaacaatccatatattatcatgtagtaacataattgaaaa |
498 |
Q |
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| T |
31810928 |
ttgttttaacaaattgcttaaaggacttgggcctgtttaacaaatctttagggttccaacaaacagtccatatattaccatgtagtaacataattgaaaa |
31810829 |
T |
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| Q |
499 |
ggcacatctgaaatactatatattttagcttcccaaaataagcttccatcctgagagactagtctccttgagtactgtaaaacgtcaaatgcggagactt |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31810828 |
ggcacatctgaaatactatatattttagcttcccaaaataagcttccatcctgagagactagtctccttgggtactgtaaaacgtcaaatgcggagactt |
31810729 |
T |
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| Q |
599 |
cttccatctatgattttctatacggttgaattcaacataacatatttaagggacctgaaccaaatccagttgatcactttaatgccgttggggagtgaag |
698 |
Q |
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| T |
31810728 |
cttccatctatgattttctatacggttgaattcaacataacatatttaagggacctgaaccaaatccagttgatcactttaatgccgttggggagtgaag |
31810629 |
T |
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| Q |
699 |
tccnnnnnnntggtaatggataaaaccaaa |
728 |
Q |
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||| || ||||||||||||||||| |
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| T |
31810628 |
tccaaaaaaatgataatggataaaaccaaa |
31810599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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