View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_22 (Length: 491)
Name: NF5400_low_22
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 40735953 - 40736217
Alignment:
| Q |
18 |
atataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctgaaatttgcagcgatgagatgata |
117 |
Q |
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| T |
40735953 |
atataacctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacactcctacatcaagtatctgaaatttgcagcgatgagatgat- |
40736051 |
T |
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| Q |
118 |
tgagcgaatcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacataaccttgaattcaattcaattt |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40736052 |
-gagcgaatcattctcaatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacataaccttgaattgaattcaattt |
40736150 |
T |
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| Q |
218 |
gataaccctaatctctgaacaacaaagacacgggtttgctttgttaaaagattttttagtaaacaaa |
284 |
Q |
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| T |
40736151 |
gataaccctaatctctgaacaacaaagacacgggtttgccttgttaaaagattttttagtaaacaaa |
40736217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 345 - 478
Target Start/End: Original strand, 40736277 - 40736410
Alignment:
| Q |
345 |
aaaccaactatctttcgcgcgcaacttgaggagactaatccatcgaactttctaaggcctaaatgggcgacaaactctctttatttttgtcaatccttcc |
444 |
Q |
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| T |
40736277 |
aaaccaactatctttcgcgcgcaacttgcggagactaatccatcgaactttctaaggcgtaaatgggcgacaaactctctttatttttgtcaatccttcc |
40736376 |
T |
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| Q |
445 |
tcaaatatcctctttgttttcctccatcttatat |
478 |
Q |
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| T |
40736377 |
tcaaatatcctctttgttttcctccatcttatat |
40736410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 33004085 - 33004154
Alignment:
| Q |
126 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
195 |
Q |
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| T |
33004085 |
tcattctggaagatgaaggaagcctcaagccattggagagattcattctggaggaagcattgattaacat |
33004154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 37469674 - 37469588
Alignment:
| Q |
126 |
tcattctcgatgatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacataaccttgaattcaattc |
212 |
Q |
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| T |
37469674 |
tcattctggaggatgaaggaagcctcatactgtaggcgagattcattctggaggaagcgttgattaacataaccttgaatttaattc |
37469588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37469855 - 37469779
Alignment:
| Q |
23 |
acctcctccttcgataactctgaaaactccgtaatccaatgtcctgtggaacgctcctacatcaagtatctgaaatt |
99 |
Q |
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| T |
37469855 |
acctcctctgtcgataactctggaaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaatt |
37469779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 37469708 - 37469664
Alignment:
| Q |
134 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
178 |
Q |
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| T |
37469708 |
gatgatgagcgaagcctcgcgccattggagagattcattctggag |
37469664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 17594991 - 17595049
Alignment:
| Q |
137 |
gatgaaggaagcctcacgccattggagagattcattctggagtaagcgttgattaacat |
195 |
Q |
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|||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
17594991 |
gatgaaggaagcgtcacgccatacgagagattcatcttggaggaagcgttgattaacat |
17595049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 17594946 - 17594990
Alignment:
| Q |
134 |
gatgatgaaggaagcctcacgccattggagagattcattctggag |
178 |
Q |
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| T |
17594946 |
gatgatgagcgaagcctcacgccattggagagactcatactggag |
17594990 |
T |
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