View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_24 (Length: 475)

Name: NF5400_low_24
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_24
NF5400_low_24
[»] chr5 (5 HSPs)
chr5 (10-300)||(27892673-27892963)
chr5 (356-420)||(27892552-27892616)
chr5 (10-181)||(32578407-32578578)
chr5 (12-181)||(20624119-20624291)
chr5 (18-109)||(17468439-17468530)
[»] chr7 (10 HSPs)
chr7 (13-181)||(7228042-7228212)
chr7 (12-181)||(23103078-23103248)
chr7 (10-193)||(25992360-25992544)
chr7 (16-94)||(19856880-19856959)
chr7 (29-177)||(5057668-5057817)
chr7 (12-181)||(45956283-45956442)
chr7 (18-109)||(8858893-8858985)
chr7 (18-109)||(8859508-8859600)
chr7 (14-95)||(12866138-12866220)
chr7 (14-109)||(983733-983829)
[»] chr2 (7 HSPs)
chr2 (15-181)||(25677456-25677623)
chr2 (10-175)||(5369391-5369557)
chr2 (15-181)||(24927832-24927999)
chr2 (11-181)||(33856437-33856603)
chr2 (16-181)||(25895799-25895955)
chr2 (16-109)||(17558819-17558913)
chr2 (65-177)||(30969196-30969308)
[»] chr8 (5 HSPs)
chr8 (11-181)||(22541021-22541189)
chr8 (10-178)||(33349892-33350060)
chr8 (14-109)||(30122896-30122992)
chr8 (65-180)||(9243007-9243121)
chr8 (20-57)||(25988383-25988420)
[»] chr4 (7 HSPs)
chr4 (10-193)||(27304187-27304369)
chr4 (10-181)||(51460985-51461157)
chr4 (10-178)||(22271128-22271297)
chr4 (14-94)||(10178903-10178984)
chr4 (61-171)||(9196770-9196879)
chr4 (33-100)||(21639772-21639840)
chr4 (80-178)||(50978886-50978984)
[»] chr1 (6 HSPs)
chr1 (10-170)||(26780909-26781075)
chr1 (15-109)||(15877280-15877375)
chr1 (10-178)||(19883599-19883768)
chr1 (12-116)||(33078331-33078436)
chr1 (14-109)||(15243887-15243983)
chr1 (18-109)||(1971628-1971720)
[»] chr3 (1 HSPs)
chr3 (12-181)||(4288221-4288392)
[»] scaffold0037 (1 HSPs)
scaffold0037 (12-92)||(107636-107717)
[»] chr6 (1 HSPs)
chr6 (61-177)||(6633763-6633879)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 27892963 - 27892673
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  27892963 acatcatcaaacatacacaacaagcattactagttcaaaatgattaataacactaaaaacaacttaaatctataaaatactaaatagacacttattagat 27892864  T
Q  110 atcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactatttggttagttatcatctattaatgaattga 209  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27892863 atcttaggcaatgcgatcaatcaatttcttgtccattattagagttaagtgcaacgtgataaccaactatttggttagttatcatctattaacgaattga 27892764  T
Q  210 tatagtttattgcttttctttgtttatgcgaagtaagaatctagatgatcaacttctttctgactataaaatcgagataacagctagatgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27892763 tatagtttattgcttttctttgtttatgcgaagtaagaatctagatgatcaacttctttccgactataaaatcgagataacagctagatgg 27892673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 27892616 - 27892552
Alignment:
Q  356 aatcttccaatttcatgcttttgaaacctcgaaagaggacattagttgtgttaatttaccttaga 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27892616 aatcttccaatttcatgcttttgaaacctcgaaagaggacattagttgtgttaatttaccttaga 27892552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 32578578 - 32578407
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattaga 108  Q
    |||||||||||||||||  ||||||||||||| || ||||  |||||| ||||||||||| || |||||| ||||||||| |||||| ||||||||| ||    
T  32578578 acatcatcaaacatccatgacaagcattactagttcaaaagaattaattaacactaaaaaaaaattaaat-tataaaatcttaaatatgcacttatttga 32578480  T
Q  109 tatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    | |||||| |||||| |||| ||||||  ||  | |||||  ||| |||||||||||||||||||||||||||    
T  32578479 tgtcttaggcaatgcaatcactcaattctttacccattatgggagctaagtgcaacgtgataaccaactattt 32578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 20624291 - 20624119
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatga-ttaataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagata 110  Q
    |||||||||||||||||| || |||||||| |||||||||| ||| ||||| |||  || | ||||| |||||||||||||||  |||||| || ||||     
T  20624291 atcatcaaacatccacaaaaaacattactagtttaaaatgacttattaacaataacgactaattaaaactataaaatcctaaactggcactaataagatg 20624192  T
Q  111 tcttagacaatgcgatcaatcaatttcttgtctattattagag--ttaagtgcaacgtgataaccaactattt 181  Q
    || |||  |||||  ||| |||||||| |||  | |||  |||   |||||||||||| ||||||||||||||    
T  20624191 tcataggaaatgcagtcactcaatttcatgttcactatgggagctataagtgcaacgtaataaccaactattt 20624119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 17468530 - 17468439
Alignment:
Q  18 aaacatccacaacaagcattactaatttaaaatgatt-aataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||| |||||||||| ||| || ||||||||| ||  |||||||||| || ||||| || |||| |||||||||| |||| |||||||    
T  17468530 aaacatccaaaacaagcattgctagttcaaaatgattaaactacactaaaaataa-ttaaaactgtaaattcctaaatagtcactgattagat 17468439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 7228212 - 7228042
Alignment:
Q  13 tcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaa-tcctaaataggcacttattagata 110  Q
    |||||||||||  ||||||| |||||||| || |||| ||||||| ||||||||| || ||||||| |||||||| | ||||||||||||| |||||||     
T  7228212 tcatcaaacatgtacaacaatcattactagttcaaaaagattaattaacactaaacactacttaaaactataaaaattctaaataggcactgattagatc 7228113  T
Q  111 tcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    |||||| |||| | |||| ||||||||||||  |||||  ||| |||||||||||||||||||||||||||    
T  7228112 tcttaggcaattcaatcactcaatttcttgttcattataggagctaagtgcaacgtgataaccaactattt 7228042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 23103248 - 23103078
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagata 110  Q
    ||||| |||||||||||||||||||||||| || ||||||| |||| |||||||||||| | ||||| ||||||||||||||||||||||| |||||||     
T  23103248 atcattaaacatccacaacaagcattactagttcaaaatgaataattaacactaaaaactaattaaaactataaaatcctaaataggcactaattagatg 23103149  T
Q  111 tcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
      ||||||| |||  ||| ||| ||||||||  |||||  | | |||||||||| ||||||||||||||||    
T  23103148 ctttagacattgcattcactcattttcttgttaattatgggggataagtgcaacatgataaccaactattt 23103078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 25992360 - 25992544
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgatt-aataacactaaaaacaacttaaatctataaaatcct-aaataggcacttattag 107  Q
    |||||||||||||||||  |||||||||||||||| ||||||||| |||||||||||||||||| |||| |||||| ||||| |||||| |||  |||||    
T  25992360 acatcatcaaacatccatgacaagcattactaattcaaaatgattaaataacactaaaaacaac-taaaactataacatcctaaaatagtcaccaattag 25992458  T
Q  108 atatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactatttggttagttatca 193  Q
    || |||||| |||||| |||| | ||||||| ||  |||    ||||||||||||| |||||||||||||| || ||| |||||||    
T  25992459 atgtcttaggcaatgcaatcactaaatttctcgttcattcaaggagttaagtgcaatgtgataaccaactaatttgttggttatca 25992544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 19856880 - 19856959
Alignment:
Q  16 tcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaat 94  Q
    ||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  19856880 tcaaacatccacaacaagcatcactagttcaaaatgattaattaacactaaaaacaacttaaaactataaaatcctaaat 19856959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 5057668 - 5057817
Alignment:
Q  29 acaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaa-taggcacttattagatatcttagacaatgcgat 126  Q
    |||| |||||||| || || | ||||||| |||| ||||||||||| |||| ||||||||| |||| ||| |||| ||||||| |||||| || ||  ||    
T  5057668 acaaacattactagttgaagaggattaattaacattaaaaacaactaaaat-tataaaatcttaaaatagtcactgattagatgtcttaggcattgtaat 5057766  T
Q  127 caatcaatttcttgtctattattagagttaagtgcaacgtgataaccaact 177  Q
    || ||||||  ||||| ||||| |||| |||||||||||||||||||||||    
T  5057767 cactcaattatttgtccattatgagagctaagtgcaacgtgataaccaact 5057817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 45956442 - 45956283
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagata 110  Q
    ||||||||||||||||||||| |||||||| |||||| ||| |||| ||||| ||||||          ||||||||||||||||| |||  || | ||     
T  45956442 atcatcaaacatccacaacaaacattactagtttaaa-tgactaattaacacaaaaaac----------tataaaatcctaaatagacaccgatcaaatg 45956354  T
Q  111 tcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    ||||||||||||  |||| |||||||| |||  |||||   |||||| |||||||||||||||||||||||    
T  45956353 tcttagacaatgtaatcactcaatttcgtgttcattatggaagttaaatgcaacgtgataaccaactattt 45956283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8858985 - 8858893
Alignment:
Q  18 aaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||| ||||| ||||| | ||| ||||||||||| ||||||||||||| ||||||| | ||||| || ||||||| | || |||||||    
T  8858985 aaacatccataacaaacattattgattcaaaatgattaaataacactaaaaactacttaaaacaataaattcataaatagtctctgattagat 8858893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 8859508 - 8859600
Alignment:
Q  18 aaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||| ||||| |||||||| || |||| |||||| ||||||||||||| ||||||| | ||||| |||||| ||| | || |||||||    
T  8859508 aaacatccataacaaacattactagttgaaaacgattaaataacactaaaaactacttaaaacaataaattcctaagtagtctctgattagat 8859600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 12866138 - 12866220
Alignment:
Q  14 catcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaata 95  Q
    |||||||||||||  | || |||||||| || |||||||| || ||||||||||||| | ||||| | |||||||||||||||    
T  12866138 catcaaacatccaacataaacattactagttcaaaatgatcaaataacactaaaaactaattaaaaccataaaatcctaaata 12866220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 983829 - 983733
Alignment:
Q  14 catcaaacatccacaacaagcattactaatttaaaatgattaata-acactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||||  | ||||||||| |||| ||||||||||| ||   ||||| ||||| | ||||| | |||||||||||||||| |||| |||||||    
T  983829 catcaaacataaaaaacaagcatcactagtttaaaatgatcaaactacacttaaaactaattaaaaccataaaatcctaaatagacactgattagat 983733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 25677623 - 25677456
Alignment:
Q  15 atcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagatatct 113  Q
    |||||||||||||||||||| |||||| || ||||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||  ||||||| |||    
T  25677623 atcaaacatccacaacaagctttactatttcaaaacaactaattaacactaaaaactaattaaaactataaaatcctaaataggcaccgattagatgtct 25677524  T
Q  114 tagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    |||  ||||  |||| ||||||||||||  |||||  |||||||||||||| ||||||||||| ||||    
T  25677523 taggtaatgaaatcactcaatttcttgttcattataggagttaagtgcaacatgataaccaacaattt 25677456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 5369557 - 5369391
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcct-aaataggcacttattag 107  Q
    |||||||||||||||||  ||||||||||||| || |||| ||||| | || ||||||||||||| ||| |||||||||| | |||||| || | |||||    
T  5369557 acatcatcaaacatccatgacaagcattactagttcaaaaggattacttaatactaaaaacaactaaaa-ctataaaatcattaaatagtcattgattag 5369459  T
Q  108 atatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaa 175  Q
    || |||||| |||||| |||| | | ||| ||||| ||||| ||||||||||||||||||||||||||    
T  5369458 atgtcttaggcaatgcaatcattaatttttttgtccattataagagttaagtgcaacgtgataaccaa 5369391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 24927999 - 24927832
Alignment:
Q  15 atcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagatatct 113  Q
    ||||||||| |||||||||| |||||| || ||||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||  ||||||| |||    
T  24927999 atcaaacattcacaacaagctttactatttcaaaacaactaattaacactaaaaactaattaaaactataaaatcctaaataggcaccgattagatgtct 24927900  T
Q  114 tagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    |||  ||||  |||| |||||||| |||  ||||   ||| |||||||||| ||||||||||||||||    
T  24927899 taggtaatgaaatcactcaatttcctgttcattacaggagctaagtgcaacatgataaccaactattt 24927832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 33856437 - 33856603
Alignment:
Q  11 catcatcaaacatccacaacaagcattactaatttaaaatga-ttaataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||| |||||||||||||||||||||| || || ||||||| ||| ||||||||||||  | ||||| ||| |||| | ||||||||     |||| ||    
T  33856437 catcaccaaacatccacaacaagcattaatagttcaaaatgacttattaacactaaaaattaattaaaactacaaaagcgtaaatagg-----attacat 33856531  T
Q  110 atcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
     |||||| |||||| |||| ||||||| ||||  |||||  |||||||||||||||||||||||||||||||    
T  33856532 gtcttaggcaatgcaatcattcaatttattgttcattatgggagttaagtgcaacgtgataaccaactattt 33856603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 25895799 - 25895955
Alignment:
Q  16 tcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagatatctt 114  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||          |||||||||||||||||  || | ||||||||| ||    
T  25895799 tcaaacatccacaacaagcattactattttaaaatgattaattaacactaaaaa----------ctataaaatcctaaataaacattgattagatatttt 25895888  T
Q  115 agacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
    |||||||||  ||| ||||| |||||   ||||| | |  |||||||||| |||||||||| |||||    
T  25895889 agacaatgcattcactcaatatcttgctcattatgaaaaataagtgcaacatgataaccaattattt 25895955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 17558819 - 17558913
Alignment:
Q  16 tcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    |||||||| || |||| ||||||||| |||||||||||||| ||||||||||||| ||||||| | ||||| || ||||||| |||| |||||||    
T  17558819 tcaaacattcaaaacatgcattactagtttaaaatgattaattaacactaaaaactacttaaaaccataaattcataaatagtcactgattagat 17558913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 30969308 - 30969196
Alignment:
Q  65 aaaacaacttaaatctataaaatcctaaataggcacttattagatatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaac 164  Q
    ||||| ||||||| ||||||| ||  ||||||||| | ||||||| | | ||||| ||| |||| |||||| ||| || |||||  | | ||||||||||    
T  30969308 aaaaccacttaaagctataaattctaaaataggcattgattagatgtgtaagacattgcaatcattcaattacttatccattataggggctaagtgcaac 30969209  T
Q  165 gtgataaccaact 177  Q
    |||||||||||||    
T  30969208 gtgataaccaact 30969196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 22541189 - 22541021
Alignment:
Q  11 catcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| || ||||||  | | ||||  |||||||||| ||||||| || | |||||||    
T  22541189 catcatcaaacatccacaacaagcattactagttcaaaatgattaattaaaactaaa--ctaattaagactataaaatcttaaatagacattgattagat 22541092  T
Q  110 atcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
     ||| || |||||| || |  ||||||||||| |||||| |||| || ||||||||||||||||||||||||    
T  22541091 gtctgaggcaatgcaattatgcaatttcttgtttattatgagagcta-gtgcaacgtgataaccaactattt 22541021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 33349892 - 33350060
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaa-taggcacttattag 107  Q
    ||||||||| | |||||  |||||||||| | ||| ||||  ||||| |||||||| |||| ||| |||| |||||||||||||| ||| || | || ||    
T  33349892 acatcatcagaaatccatgacaagcattagtgattcaaaagtattaaataacactataaactactaaaat-tataaaatcctaaaatagtca-tgataag 33349989  T
Q  108 atatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaacta 178  Q
    || |||||| |||||| |||| | ||||||||||| ||||| |||| ||||||||| ||||||||||||||    
T  33349990 atgtcttagccaatgcaatcacttaatttcttgtccattatgagagctaagtgcaatgtgataaccaacta 33350060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 30122896 - 30122992
Alignment:
Q  14 catcaaacatccacaacaagcattactaatttaaaatgatta-ataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||||||| |||||  ||||||| || |||||||  | |||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||    
T  30122896 catcaaacatccaaaacaaaaattactagttcaaaatgaccacataacactaaaaactaattaaaactataaaatcctaaatatgcactaattagat 30122992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 9243007 - 9243121
Alignment:
Q  65 aaaacaacttaaatctataaaatcctaaataggcacttattagatatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaac 164  Q
    ||||||||||||| |||||||||||||||||| || | |||| || |||||| |||| | |||| | ||||||||||| |||||  | ||||||||||||    
T  9243007 aaaacaacttaaa-ctataaaatcctaaatagacattgattaaatgtcttaggcaattcaatcactaaatttcttgtccattatgggggttaagtgcaac 9243105  T
Q  165 gtgataaccaactatt 180  Q
     | |||||||| ||||    
T  9243106 atcataaccaattatt 9243121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 25988420 - 25988383
Alignment:
Q  20 acatccacaacaagcattactaatttaaaatgattaat 57  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  25988420 acatccacaacaaacattactagtttaaaatgattaat 25988383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 27304369 - 27304187
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattaga 108  Q
    |||| ||||||||| ||  | ||||||||||| || ||||||| |||| ||||||||||||||||||| |||||||| || |||||||||||| ||||||    
T  27304369 acataatcaaacattcatgaaaagcattactagttcaaaatgactaattaacactaaaaacaacttaa-tctataaa-tcataaataggcactaattaga 27304272  T
Q  109 tatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactatttggttagttatca 193  Q
      ||| || |||||| |||| |||||||||| || |||||  ||| |||||||||| |||||| ||||||||| || ||||||||    
T  27304271 cgtctcaggcaatgcaatcactcaatttcttatccattatgggagctaagtgcaacatgataatcaactattttgtcagttatca 27304187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 51461157 - 51460985
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattaga 108  Q
    |||| |||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||||  ||||||||| |||||||||||  |||| |    
T  51461157 acattatcaaacatccacaacaagcattaatagttcaaaatgattaattaacactaaaaacaacttaaaattataaaatcgtaaataggcaccaattata 51461058  T
Q  109 tatcttagacaatgcgatcaatcaatttcttgtctattattagag-ttaagtgcaacgtgataaccaactattt 181  Q
        ||||||||| | |||| |||||||| ||| ||||| ||| |  |||||| ||| ||||||||||||||||    
T  51461057 agctttagacaatacaatcactcaatttcatgtttatta-tagtgcataagtgtaacatgataaccaactattt 51460985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 22271128 - 22271297
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgatt-aataacactaaaaacaacttaaatctataaaatcct-aaataggcacttattag 107  Q
    ||||||||||||||||| ||||| ||||| || || ||||||||| |||||||||||||| ||| |||| |||||||||||| |||||| |||| ||||     
T  22271128 acatcatcaaacatccataacaaacattattagttcaaaatgattaaataacactaaaaataac-taaaactataaaatcctaaaatagtcactgattat 22271226  T
Q  108 atatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaacta 178  Q
    || ||||||||| ||| |||| | ||||||||||| || |  |||| ||||||||| || |||||| ||||    
T  22271227 atgtcttagacagtgcaatcacttaatttcttgtccatcacgagagctaagtgcaatgtaataaccgacta 22271297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 10178984 - 10178903
Alignment:
Q  14 catcaaacatccacaacaagcattactaatttaaaatgatt-aataacactaaaaacaacttaaatctataaaatcctaaat 94  Q
    ||||||||||||| |||||| ||||||| || ||||||||| ||||||||||||||  | ||||| ||||||||||||||||    
T  10178984 catcaaacatccaaaacaagtattactagttcaaaatgattaaataacactaaaaattaattaaaactataaaatcctaaat 10178903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 9196879 - 9196770
Alignment:
Q  61 actaaaaacaacttaaatctataaaatcctaaataggcacttattagatatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtg 160  Q
    |||||||||| |||||| |||||||||||||||||  |||  ||||||| |   || |||||| |||| |||||| |||||| | ||| | |||||||||    
T  9196879 actaaaaaca-cttaaaactataaaatcctaaataaacacagattagatgttaaaggcaatgcaatcactcaattacttgtccaatataacagttaagtg 9196781  T
Q  161 caacgtgataa 171  Q
    |||||||||||    
T  9196780 caacgtgataa 9196770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 21639840 - 21639772
Alignment:
Q  33 gcattactaatttaaaatgattaata-acactaaaaacaacttaaatctataaaatcctaaataggcac 100  Q
    ||||||||| || ||||||||||||  | ||||||||||||||||| |||||||||  |||||||||||    
T  21639840 gcattactatttcaaaatgattaatttaaactaaaaacaacttaaaactataaaattataaataggcac 21639772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 50978984 - 50978886
Alignment:
Q  80 tataaaatcctaaataggcacttattagatatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaacta 178  Q
    |||||||||||||||||||||   ||||||   ||||||||||   ||| ||||||||||||  |||||  ||| |||||||||||| |||||| ||||    
T  50978984 tataaaatcctaaataggcaccggttagatgctttagacaatgtattcactcaatttcttgttcattataggagataagtgcaacgtaataaccgacta 50978886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 26780909 - 26781075
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaat-----ctataaaatcctaaataggcactta 103  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||| ||||||||||||||||||||||       | ||||||||||||||||| | |    
T  26780909 acatcatcaaacatccaggacaagcattactagttcaaaatgattaattaacactaaaaacaacttaaattaaaaaaaaaaaatcctaaataggcattga 26781008  T
Q  104 ttagatatcttagacaatgcgat-caatcaatttcttgtctattattagagttaagtgcaacgtgata 170  Q
    ||| || |||||| |||||| || |||||||||||||||| |||||  ||||||||| ||||||||||    
T  26781009 ttatatgtcttaggcaatgcaatgcaatcaatttcttgtc-attatgggagttaagtacaacgtgata 26781075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 15877375 - 15877280
Alignment:
Q  15 atcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||| ||||||||||||| | || |||| |||||||    
T  15877375 atcaaacatccacaacaatcattactagttcaaaatgattaattaacactaaaaactacttaaagctataaaatcctagaaagccactgattagat 15877280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 19883599 - 19883768
Alignment:
Q  10 acatcatcaaacatccacaacaagcattactaatttaaaatgatta-ataacactaaaaacaacttaaatctataaaatcctaaa-taggcacttattag 107  Q
    |||||||||||| ||||   |||||||||| | || |||  ||||| ||||||||||| |||||| | | |||||| ||| |||| ||| |||| |||||    
T  19883599 acatcatcaaacgtccatggcaagcattacaagttcaaatggattacataacactaaagacaact-acacctataagatcttaaaatagtcactgattag 19883697  T
Q  108 atatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaacta 178  Q
    || |||||  |||||| |||| || ||||||||||  ||||  ||||||||||||||||||||||||||||    
T  19883698 atgtcttaagcaatgcaatcactcgatttcttgtcccttatgggagttaagtgcaacgtgataaccaacta 19883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 33078436 - 33078331
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaatctataaaatcctaaataggcacttattagata 110  Q
    |||||||||||| || ||||||||| | || || ||||||| |||| |||||||||||| | ||||| || ||||||||||||||| |||| ||||||||    
T  33078436 atcatcaaacattcaaaacaagcatcattagttcaaaatgagtaattaacactaaaaactaattaaaactctaaaatcctaaatagtcactgattagata 33078337  T
Q  111 tcttag 116  Q
    | ||||    
T  33078336 ttttag 33078331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 15243983 - 15243887
Alignment:
Q  14 catcaaacatccacaacaagcattactaatttaaaatgat-taataacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    |||||| |||||| |||||||||||||| || ||||||||  ||||||||||||||  | ||||| | ||||| |||||||||| |||| |||||||    
T  15243983 catcaatcatccaaaacaagcattactagttcaaaatgatcaaataacactaaaaattaattaaaaccataaattcctaaatagtcactgattagat 15243887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 1971720 - 1971628
Alignment:
Q  18 aaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaaataggcacttattagat 109  Q
    ||||||||||||| |||||||| | || ||||||| ||| |||||||||||||  |||||| | ||||| || ||||||  ||||||||||||    
T  1971720 aaacatccacaacgagcattacaagttcaaaatgactaactaacactaaaaactgcttaaacccataaattcataaataaccacttattagat 1971628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 4288221 - 4288392
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatgattaat-aacactaaaaacaacttaaa-tctataaaatcctaaataggcacttattagat 109  Q
    |||||| |||||||| ||||| |||||||| || |||||||||||| ||||||||||||||| |||| | |||| ||||||||||| || |  |||||||    
T  4288221 atcatcgaacatccataacaaacattactagttcaaaatgattaattaacactaaaaacaacataaactatatataatcctaaatatgcgccaattagat 4288320  T
Q  110 atcttagacaatgcgatcaatcaatttcttgtctattattagagttaagtgcaacgtgataaccaactattt 181  Q
       |||| ||||||  ||| ||| ||||||||  |||||  ||| |||||||||||||||||||||||||||    
T  4288321 gctttaggcaatgcattcactcagtttcttgttcattatgggagataagtgcaacgtgataaccaactattt 4288392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 107717 - 107636
Alignment:
Q  12 atcatcaaacatccacaacaagcattactaatttaaaatgattaa-taacactaaaaacaacttaaatctataaaatcctaa 92  Q
    |||||||||| ||||||||||||||||||| || ||| ||||||| ||||||||||||| | ||||| ||||||||||||||    
T  107717 atcatcaaacttccacaacaagcattactagttcaaattgattaattaacactaaaaactaattaaaactataaaatcctaa 107636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 6633763 - 6633879
Alignment:
Q  61 actaaaaacaacttaaatctataaaatcctaaa-taggcacttattagatatcttagacaatgcgatcaatcaatttcttgtctattattagagttaagt 159  Q
    |||||||||| |||||  ||||||||||||||| || ||||| ||||||| | | || ||||||  ||| |||||| |||||| |||||  | | |||||    
T  6633763 actaaaaaca-cttaagactataaaatcctaaaataagcactgattagatgtttaaggcaatgcattcattcaattacttgtccattatgggggctaagt 6633861  T
Q  160 gcaacgtgataaccaact 177  Q
    ||||||||||||||||||    
T  6633862 gcaacgtgataaccaact 6633879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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