View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_25 (Length: 474)
Name: NF5400_low_25
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 25956137 - 25956586
Alignment:
| Q |
17 |
caaggatcaaggcaaacatcagtgttctactaccttcactttttgcccttccctctcaacatgggttacttacctatcaccattactttcatctctttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956137 |
caaggatcaaggcaaacatcagtgttctactaccttcactttttgcccttccctctcaacatgggttacttacctatcaccattactttcatctctttca |
25956236 |
T |
|
| Q |
117 |
tttttctcttcctaactcgctacaaccaactcgttcatgccgattcaccaactcttgttcccccttactcttgtgatatcaccaacccacttacaaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956237 |
tttttctcttcctaactcgctacaaccaactcgttcatgccgattcaccaactcttgttcccccttactcttgtgatatcaccaacccacttacaaaatc |
25956336 |
T |
|
| Q |
217 |
ctatactttctgcaatctcaaccttaccatcattcaaagagccaatgacatcgtgtcacggcttacattagatgagaaacttgctcaactcgttaacaca |
316 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25956337 |
ctatactttctgcaatctcaaccttaccaccattcagagagctaaagacattgtgtcacggcttacattagatgagaaacttgctcaactcgttaataca |
25956436 |
T |
|
| Q |
317 |
gctcctgccattcctcgactcggtatacctagttaccaatggtggagtgaagcgttgcacggtgttgcagattatggtaaagggataagattgattggga |
416 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25956437 |
gctcctgccattcctcgactcggtatacatagttaccaatggtggagtgaagcgttgcacggtgttgcagattatggtaaagggataagattgaatggga |
25956536 |
T |
|
| Q |
417 |
atgtaactattaaagctgcaactattttccctcaagttattctctctgct |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25956537 |
atgtaactattaaagctgcaactattttccctcaagttattctcactgct |
25956586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 67 - 410
Target Start/End: Complemental strand, 25929476 - 25929133
Alignment:
| Q |
67 |
ccctctcaacatgggttacttacctatcaccattactttcatctctttcatttttctcttcctaactcgctacaaccaactcgttcatgccgattcacca |
166 |
Q |
| |
|
||||| || ||||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
25929476 |
ccctcacagcatgggtcacttttccatcaccattaccttcatctctttcatttttctcttcctaactcgctaccaccgactcgttcatgccgattcacca |
25929377 |
T |
|
| Q |
167 |
actcttgttcccccttactcttgtgatatcaccaacccacttacaaaatcctatactttctgcaatctcaaccttaccatcattcaaagagccaatgaca |
266 |
Q |
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|||| ||| || || ||||| ||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
25929376 |
actcatgtacctccatactcctgtgacaccaccaacccacttacaaaatccttacccttctgcaatctcaaccttaccatcactcaaagagccaaagaca |
25929277 |
T |
|
| Q |
267 |
tcgtgtcacggcttacattagatgagaaacttgctcaactcgttaacacagctcctgccattcctcgactcggtatacctagttaccaatggtggagtga |
366 |
Q |
| |
|
| ||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
25929276 |
ttgtgtcacggctcacattggatgagaaaatctctcaactcgttaacacagctccttccattcctcgactcggtataccgagttaccaatggtgggatga |
25929177 |
T |
|
| Q |
367 |
agcgttgcacggtgttgcagattatggtaaagggataagattga |
410 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
25929176 |
agcgttgcacggtgttgctaatgctggtaaagggataagattga |
25929133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 111 - 460
Target Start/End: Complemental strand, 25888947 - 25888601
Alignment:
| Q |
111 |
ctttcatttttctcttcctaactcgctacaaccaactcgttcatgccgattcac---caactcttgttcccccttactcttgtgatatcaccaacccact |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| | ||| ||| ||||||||||| ||||| | | |||||||||| |
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|
| T |
25888947 |
ctttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcacttgctactaatgtacccccttactcctgtgacacctccaacccact |
25888848 |
T |
|
| Q |
208 |
tacaaaatcctatactttctgcaatctcaaccttaccatcattcaaagagccaatgacatcgtgtcacggcttacattagatgagaaacttgctcaactc |
307 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||| ||||||||| | |||||||| |
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|
| T |
25888847 |
tacaaaatcctttccattctgcaatctcaaccttaccatcactcaaagagcaaaagacatcgtgtcacggctcacattggatgagaaaatctctcaactc |
25888748 |
T |
|
| Q |
308 |
gttaacacagctcctgccattcctcgactcggtatacctagttaccaatggtggagtgaagcgttgcacggtgttgcagattatggtaaagggataagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||| | || |||||| |||||||||| |
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| T |
25888747 |
gttaacacagctcctgccattcctcgactcggtataccgagttaccaatggtggaatgaagctttgcatggtgtttcttatgttggtaaggggataagat |
25888648 |
T |
|
| Q |
408 |
tgattgggaatgtaactattaaagctgcaactattttccctcaagttattctc |
460 |
Q |
| |
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| ||||| | ||||| ||||||||||| |||||||||| |||||||| |
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|
| T |
25888647 |
t------gaatggtagtattacagctgcaactagtttccctcaaattattctc |
25888601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 92 - 382
Target Start/End: Complemental strand, 25912987 - 25912697
Alignment:
| Q |
92 |
atcaccattactttcatctctttcatttttctcttcctaactcgctacaaccaactcgttcatgccgattcaccaactcttgttcccccttactcttgtg |
191 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||||||| |||| |
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| T |
25912987 |
atcaccataactttcatctctttcattttactcttcctaactcgctaccaccaactcgttcatgccgatccaccaactcttgtacctccttactcctgtg |
25912888 |
T |
|
| Q |
192 |
atatcaccaacccacttacaaaatcctatactttctgcaatctcaaccttaccatcattcaaagagccaatgacatcgtgtcacggcttacattagatga |
291 |
Q |
| |
|
| | | | ||||||| |||||||| | | | || |||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||| ||||| |
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|
| T |
25912887 |
acacctcaaacccacgtacaaaattatttcccttttgcaatctcaaccttaccatcactcaaagagccaaagacatcgtatcacggctcacattggatga |
25912788 |
T |
|
| Q |
292 |
gaaacttgctcaactcgttaacacagctcctgccattcctcgactcggtatacctagttaccaatggtggagtgaagcgttgcacggtgtt |
382 |
Q |
| |
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|||| | | ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||| |||||| |
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| T |
25912787 |
gaaagtctcccaactcgttaacacagctcctgccattcctcgactcgatataccgagttaccaatggtggaatgaagctttgcatggtgtt |
25912697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 33425426 - 33425338
Alignment:
| Q |
281 |
acattagatgagaaacttgctcaactcgttaacacagctcctgccattcctcgactcggtatacctagttaccaatggtggagtgaagc |
369 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||||| |||||||| |||| ||||| ||| ||| |||||||||||||||| |
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| T |
33425426 |
acattggatgagaaacttgctcaactagttaactcagctcctcccattcctagacttggtatccctgcttatgaatggtggagtgaagc |
33425338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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