View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_27 (Length: 441)
Name: NF5400_low_27
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_27 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 925 - 1354
Alignment:
| Q |
13 |
atcatcgcccttctaatatctattatgccacccaccatcaggtcactcagatcatgtgccagatgtctagaacttgacgtgaggggagtgagttgagcgt |
112 |
Q |
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| T |
925 |
atcatagcccttctaatatctattatgccacccaccatcaggtcactcagatcatgcgtcagatgtttagaacttgacgtgaggggagtgagttgagagt |
1024 |
T |
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| Q |
113 |
attacattgaataagatatgatttgaaaacatctttataagtgggtcattccacaccttattgtacgttgaatttggcctaatctaaattttcaagagat |
212 |
Q |
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| T |
1025 |
attacattgaataagatatgacttgaaaacatctttataagtgggtcattccacaccttattgtacattgagtttggcctaatctaaattttcaagagat |
1124 |
T |
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| Q |
213 |
atcatcatatgagtatctatttctacttgacccacctatttgcaacatcaaatgattgttttgtagattttaaaatcaaata-nnnnnnnngcaaaactt |
311 |
Q |
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| T |
1125 |
atcatcatatgagtatctatttctacttgacccacctatttgcaacatcaaatgattgttttgtagattttaaaatcaaatatttttttttgcaaaactt |
1224 |
T |
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| Q |
312 |
tcaaaaaataactttatgcacatttggtgagcaccaggtcaaatagtacactactgtcaacaaccaccctgtcaaacaatgatttagttggctcccctgg |
411 |
Q |
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| T |
1225 |
tcaaaaaaaaactttatgcacatttggtgagcaccaggtcaaatagtacactactgtcaacaaccaccctgtcaaacaatgatttagttggctcccctgg |
1324 |
T |
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| Q |
412 |
caacatagcattggcatccccccgagtaac |
441 |
Q |
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| T |
1325 |
caacatagcattggcatccccccgagtaac |
1354 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 705982 - 705942
Alignment:
| Q |
114 |
ttacattgaataagatatgatttgaaaacatctttataagt |
154 |
Q |
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| T |
705982 |
ttacattggataagatatgatttgaaaatatgtttataagt |
705942 |
T |
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