View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_28 (Length: 439)

Name: NF5400_low_28
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_28
NF5400_low_28
[»] chr6 (34 HSPs)
chr6 (18-275)||(26651075-26651337)
chr6 (18-275)||(26757043-26757305)
chr6 (46-275)||(26966097-26966332)
chr6 (18-186)||(27422500-27422673)
chr6 (52-275)||(26631459-26631688)
chr6 (52-275)||(26737434-26737663)
chr6 (53-228)||(27714070-27714251)
chr6 (53-228)||(27702303-27702484)
chr6 (137-249)||(31289405-31289518)
chr6 (54-228)||(26890066-26890246)
chr6 (69-126)||(26640690-26640747)
chr6 (69-126)||(26746656-26746713)
chr6 (296-353)||(27588931-27588988)
chr6 (53-215)||(26628012-26628179)
chr6 (53-215)||(26733989-26734156)
chr6 (69-206)||(26828382-26828524)
chr6 (296-349)||(26807119-26807172)
chr6 (297-350)||(26963781-26963834)
chr6 (18-111)||(26964318-26964411)
chr6 (101-209)||(27652226-27652339)
chr6 (296-350)||(26639789-26639843)
chr6 (296-350)||(26745755-26745809)
chr6 (125-219)||(26853696-26853790)
chr6 (133-219)||(27586682-27586768)
chr6 (53-115)||(27652343-27652405)
chr6 (296-340)||(26629049-26629093)
chr6 (296-340)||(26735025-26735069)
chr6 (296-338)||(25078370-25078412)
chr6 (298-348)||(27419419-27419469)
chr6 (296-346)||(27506973-27507023)
chr6 (296-341)||(26650541-26650586)
chr6 (296-341)||(26756509-26756554)
chr6 (397-433)||(26639871-26639907)
chr6 (397-433)||(26745837-26745873)
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-186)||(64690-64863)
scaffold0003 (298-348)||(67894-67944)
[»] chr8 (1 HSPs)
chr8 (53-228)||(29269963-29270144)
[»] scaffold0349 (1 HSPs)
scaffold0349 (53-228)||(17693-17874)
[»] chr4 (1 HSPs)
chr4 (71-234)||(5083105-5083274)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 26651075 - 26651337
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| |||  |||||||||||||||| ||||| |||| | ||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  26651075 gaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26651174  T
Q  118 tctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgcta 212  Q
    ||||||||     | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  26651175 tctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgcta 26651274  T
Q  213 tgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  26651275 tgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 26757043 - 26757305
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| |||  |||||||||||||||| ||||| |||| | ||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  26757043 gaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26757142  T
Q  118 tctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgcta 212  Q
    ||||||||     | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  26757143 tctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgcta 26757242  T
Q  213 tgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  26757243 tgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26757305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 275
Target Start/End: Original strand, 26966097 - 26966332
Alignment:
Q  46 aattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgt 140  Q
    ||||| |||||||||| |  || ||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||     |||||| |||| |||    
T  26966097 aattcaggcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgt 26966196  T
Q  141 catgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc-tttgagctcagttatactggtttc 239  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||| ||||| |||| || ||||||||  | ||| | ||||||| |||||||| |    
T  26966197 catgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgctacacttttcatctcagttttactggttgc 26966296  T
Q  240 agaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||| |||  ||||||||||||| |||||| ||||||    
T  26966297 agagtttgaagaatttcaatcttagtacaaaaattg 26966332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 27422673 - 27422500
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27422673 gaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 27422574  T
Q  118 tctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 186  Q
    |||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  27422573 tctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 27422500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 275
Target Start/End: Original strand, 26631459 - 26631688
Alignment:
Q  52 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 146  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26631459 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26631557  T
Q  147 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 244  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26631558 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26631657  T
Q  245 tttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||||||| | |||||||||||||    
T  26631658 tttgagaatttcaatattagtacacaaattg 26631688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 275
Target Start/End: Original strand, 26737434 - 26737663
Alignment:
Q  52 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 146  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26737434 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26737532  T
Q  147 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 244  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26737533 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26737632  T
Q  245 tttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||||||| | |||||||||||||    
T  26737633 tttgagaatttcaatattagtacacaaattg 26737663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 27714251 - 27714070
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  27714251 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 27714152  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  27714151 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 27714070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 27702484 - 27702303
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| |||||| |||  ||||||||||||||||||| |  ||||||     |||||| |||||||||||||||    
T  27702484 gcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcga 27702385  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || ||||||||| |||||||||| |||||  |||||||||||| ||||||||| |||||||||    
T  27702384 caagtctagaggttgcttacagcacagaatccgttggttgttcgaaaggacagtgagtaatgatatgctttgcagctcagtt 27702303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 31289405 - 31289518
Alignment:
Q  137 ttgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactgg 235  Q
    |||||||||||||||||||| | || |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||| |||||||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactgg 31289504  T
Q  236 tttcagaattttga 249  Q
    || |||| ||||||    
T  31289505 ttacagagttttga 31289518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 26890066 - 26890246
Alignment:
Q  54 caacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgac 148  Q
    |||||||| | ||| ||||||||| |||||| || || |||  ||||||||||||||||||| |||||||||     |||||| |  | ||||||| ||     
T  26890066 caacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggag 26890165  T
Q  149 atgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    |||||||||| ||  ||||||||||||||| || |||||||  |||| ||||||||||| | ||||||||| |||||||||    
T  26890166 atgtctagaggttgttcgcaccacagaatccgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagtt 26890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26640690 - 26640747
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 126  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26640690 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26640747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26746656 - 26746713
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 126  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26746656 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26746713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 27588988 - 27588931
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatcccaaag 353  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  27588988 tttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaag 27588931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 26628012 - 26628179
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26628012 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26628111  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 215  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26628112 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26628179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 26733989 - 26734156
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26733989 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26734088  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 215  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26734089 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26734156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 26828382 - 26828524
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg-----gctatgtgcattgtcatgcgacatgtctagagatttc 163  Q
    ||||||||||||||| |||||| |||  ||||||||||||||||  ||||||||||||     |||||  |||||||||||||  |||||||| | || |    
T  26828382 caaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgc 26828481  T
Q  164 tcgcaccacagaatctgttggttgtttgaaagtgcagtgagta 206  Q
    ||| |||||| |||| ||| |||| | ||||| ||| ||||||    
T  26828482 tcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 26828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 26807119 - 26807172
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccc 349  Q
    |||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  26807119 tttagtcataatctttgtgaaagatcttttgaaaaagaaattggttattatccc 26807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 26963781 - 26963834
Alignment:
Q  297 ttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  26963781 ttaatcataatctttatgaaagatcttttgaaaaagaaattgattgatatccca 26963834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26964318 - 26964411
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcagg 111  Q
    ||||||||||| |||  |||||||||||||||| ||||| || | | ||| ||||||||   |||||||| |||||| ||||||||||||||||    
T  26964318 gaaataaacataaggtagttatgtttcaaattcaggcaagttatctctaaccaaaactacaaatttactttttctttgtctgtacattgtcagg 26964411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 27652339 - 27652226
Alignment:
Q  101 acattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaag 195  Q
    |||||||||||||||||||| | ||     |||||| |||||||||||| || ||||||||| ||| ||||||||||| ||||  |||||||||  ||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaag 27652240  T
Q  196 tgcagtgagtaatg 209  Q
     ||||||| |||||    
T  27652239 ggcagtgactaatg 27652226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 26639789 - 26639843
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    |||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||    
T  26639789 tttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatccca 26639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 26745755 - 26745809
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    |||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||    
T  26745755 tttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatccca 26745809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 26853696 - 26853790
Alignment:
Q  125 tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 219  Q
    ||||||| ||||||||||| | | || ||||| | || | | ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  26853696 tggctatttgcattgtcattcaagatatctaggggttgcgcacaccacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttg 26853790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 27586768 - 27586682
Alignment:
Q  133 tgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 219  Q
    ||||||||||| ||| ||||||| || |  |||  |||||||||||||| | ||||||||||  ||||||||||||| |||||||||    
T  27586768 tgcattgtcatacgagatgtctataggtggctcaaaccacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttg 27586682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 27652405 - 27652343
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaac 115  Q
    ||||||||| | ||| ||||||||||||||||||||||| ||  || ||||||||||||||||    
T  27652405 gcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 26629049 - 26629093
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgat 340  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||    
T  26629049 tttaatcataatctttatgaaagatcttctgaaaaagaaattgat 26629093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 26735025 - 26735069
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgat 340  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||    
T  26735025 tttaatcataatctttatgaaagatcttctgaaaaagaaattgat 26735069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 25078370 - 25078412
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattg 338  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||    
T  25078370 tttaatcttaatctttgtgaaagatcttttgaaaaagaaattg 25078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 27419469 - 27419419
Alignment:
Q  298 taatcataatatttttgaaagatcttttgaaaaagaaattgattattatcc 348  Q
    ||||||||||||||| |||| ||||||| |||||||| ||||| |||||||    
T  27419469 taatcataatattttcgaaacatctttttaaaaagaagttgatcattatcc 27419419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 27507023 - 27506973
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattat 346  Q
    |||||||||||| ||| |||| ||||||||||| |||||||||||| ||||    
T  27507023 tttaatcataatctttatgaaggatcttttgaataagaaattgattgttat 27506973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26650541 - 26650586
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgatt 341  Q
    |||||||||||| ||| |||||||||||||||| |||| |||||||    
T  26650541 tttaatcataatctttatgaaagatcttttgaagaagagattgatt 26650586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26756509 - 26756554
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgatt 341  Q
    |||||||||||| ||| |||||||||||||||| |||| |||||||    
T  26756509 tttaatcataatctttatgaaagatcttttgaagaagagattgatt 26756554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 26639871 - 26639907
Alignment:
Q  397 cttgtcatttcttagggactatgaataccgttaatgt 433  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26639871 cttgtcatttcttagggaatatgaatacagttaatgt 26639907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 26745837 - 26745873
Alignment:
Q  397 cttgtcatttcttagggactatgaataccgttaatgt 433  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26745837 cttgtcatttcttagggaatatgaatacagttaatgt 26745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 64690 - 64863
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  64690 gaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 64789  T
Q  118 tctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 186  Q
    |||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  64790 tctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 64863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 67894 - 67944
Alignment:
Q  298 taatcataatatttttgaaagatcttttgaaaaagaaattgattattatcc 348  Q
    ||||||||||||||| |||| ||||||| |||||||| ||||| |||||||    
T  67894 taatcataatattttcgaaacatctttttaaaaagaagttgatcattatcc 67944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 29270144 - 29269963
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  29270144 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 29270045  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||| || |||| |||| ||| |||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  29270044 caagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcagctcagtt 29269963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 17693 - 17874
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  17693 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 17792  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  17793 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 17874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 5083105 - 5083274
Alignment:
Q  71 aaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctc 165  Q
    |||||||||||| | || ||||||  |||||||||| ||| ||||||||||||||     |||| | ||||||||||| ||| |||||||||| |  |||    
T  5083105 aaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatacgagatgtctagaggtggctc 5083204  T
Q  166 gcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactg 234  Q
       |||||||||| || | ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||    
T  5083205 aatccacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttgtactg 5083274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University