View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_31 (Length: 419)
Name: NF5400_low_31
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 147 - 411
Target Start/End: Original strand, 10395522 - 10395782
Alignment:
| Q |
147 |
agttatagcatgcatgaaaggttgttgttttcctttgaaggtagcaggtgtcatagcaatgtcaggtattgaggagtttcatgtgacattttcatatctt |
246 |
Q |
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| T |
10395522 |
agttgtagcacggatgcaaggttgttgttttcctttgaaggcggcatgtgtcatagcaatgacagatattgaagagttttatgtgacattttcatctctt |
10395621 |
T |
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| Q |
247 |
ttaagatagttttcaaactcagtaaggagatcatgcaaatcctcttaactgacggggtttcacgagcatggataatatatagttgatatgttgtgatact |
346 |
Q |
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| T |
10395622 |
ttgagatagttttcaaactcagtaaggagatcatacaaatcctcttaattgacggggtttcacgagcatggaca----atagttgatatgttgtgatact |
10395717 |
T |
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| Q |
347 |
caggtccaacatcatttaaactgtatataattaaatcaacatcatctaattttgaattgatgatg |
411 |
Q |
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| T |
10395718 |
caggtccaagatcatttaaactgtttataattaaatcaacatcatctaattttgaattgatgatg |
10395782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 10395081 - 10395211
Alignment:
| Q |
31 |
atccttgatgtttggaacaaactttagcagcattcccttgtttgt----cacaaaattggaaaataacgt--ttgggacaaccagggaatgtgaatcaga |
124 |
Q |
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| T |
10395081 |
atccttaatgtttgtaacaaactttagcagcattcccttgtttgtttgtcacaaaattgcaaaataacatatttgggacaaccagggaatgtgaatcgga |
10395180 |
T |
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| Q |
125 |
aatagctttgagattcacgtgaagttatagc |
155 |
Q |
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| T |
10395181 |
aatagcttttagcttcacgtgaagttgtagc |
10395211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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