View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_32 (Length: 415)
Name: NF5400_low_32
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 29237460 - 29237862
Alignment:
| Q |
9 |
acatcatcaaaaactatatttgtagcttaaaccattgtgagaa--------gagaaaatctccgataggnnnnnnnttgcagcttgctcaaagcacggcg |
100 |
Q |
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| T |
29237460 |
acattatcaaaaactatatttgtagcttaaaccattgtgagaataaccaaagagaaaatctccgataggaaaaaaattgcagcttgctcaaagcacggcg |
29237559 |
T |
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| Q |
101 |
aaattaacacatgtacattttaatataaacatgttgtgtactcgtaacttactatttatgaacatgctatgaatgcataataacaagttgtccagcattc |
200 |
Q |
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| T |
29237560 |
aaattaacacatgtacattttaatataaacatgttgtgtactcgtaacttactatttatgaacatgctatgaatgcataataacaagttgtccagcattc |
29237659 |
T |
|
| Q |
201 |
cagattggaaatttaaagctttggtca--nnnnnnnnggtcatttgatggcaaccttcagttcatccaaaataaaatgtacaaaaatcaacctacagtgt |
298 |
Q |
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| T |
29237660 |
cagattggaaaattaaagctttggtcatttttttttgggtcatttgatggcaacgttcagttcatccaaaataaaatgtgcaaaaatcaacctacagtgt |
29237759 |
T |
|
| Q |
299 |
tatctcaagtgttccaatagtcaatctattcagatcattccctaatgtagcaactagtt-ccccacagaccacagtgtttatataatcaatctacagtgt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||| || |
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| T |
29237760 |
tatctcaagtgttccaatagtcaatctattcagatcattccctaatgtagcaactagttcccccacagaccacagtttttacataatcaacctacagcgt |
29237859 |
T |
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| Q |
398 |
tat |
400 |
Q |
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||| |
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| T |
29237860 |
tat |
29237862 |
T |
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