View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_33 (Length: 404)
Name: NF5400_low_33
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 246 - 385
Target Start/End: Original strand, 4117819 - 4117958
Alignment:
| Q |
246 |
cagttaaacaatggtaggatactggatgctgtggtgagccatcacttcgcaggggtgatgaatgaggcaagcaagagcaagggaataatgtaatttatag |
345 |
Q |
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| T |
4117819 |
cagttaaacaatggtaggatactggatgctgtggtgagccatcacttcgcaggggtgatgaatgaggcaagcaagagcaagggaataatgtaatttatag |
4117918 |
T |
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| Q |
346 |
atagtaataacacatttcattggaaccctaatgctttgga |
385 |
Q |
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| T |
4117919 |
atagtaataacacatttcattggaaccctaatgctttgga |
4117958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 4117611 - 4117668
Alignment:
| Q |
42 |
ccaccgtcctcaccctctc--gcctccgtatttgttctctctgcctcacactcttcac |
97 |
Q |
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| T |
4117611 |
ccaccgtcctcaccctctctcgcctctgtatttgttctctctgcctcacactcttcac |
4117668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 4117709 - 4117750
Alignment:
| Q |
136 |
gcagtaatttcacagatgtcggaatgatgcgacggcggaaac |
177 |
Q |
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| T |
4117709 |
gcagtaatttcacagatgtcagaatgatgctacggcggaaac |
4117750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 243 - 385
Target Start/End: Original strand, 21157121 - 21157263
Alignment:
| Q |
243 |
taccagttaaacaatggtaggatactggatgctgtggtgagccatcacttcgcaggggtgatgaatgaggcaagcaagagcaagggaataatgtaattta |
342 |
Q |
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| T |
21157121 |
taccagttaaacaatggtaggatactggatgctgtgatgagccatcacttcacaggggtgatgaatgaggcaagcaagagcaagggaataatgtaattta |
21157220 |
T |
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| Q |
343 |
tagatagtaataacacatttcattggaaccctaatgctttgga |
385 |
Q |
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| T |
21157221 |
tagatagtaataacacatttcattggaaccctaatgctttgga |
21157263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 21156916 - 21156973
Alignment:
| Q |
42 |
ccaccgtcctcaccctctc--gcctccgtatttgttctctctgcctcacactcttcac |
97 |
Q |
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| T |
21156916 |
ccaccgtcctcaccctctctcgcctctgtatttgttctctctgcctcacactcttcac |
21156973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 21157014 - 21157055
Alignment:
| Q |
136 |
gcagtaatttcacagatgtcggaatgatgcgacggcggaaac |
177 |
Q |
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| T |
21157014 |
gcagtaatttcacagatgtcggaatgatgcgacggcggaaac |
21157055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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