View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_35 (Length: 402)

Name: NF5400_low_35
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_35
NF5400_low_35
[»] chr5 (6 HSPs)
chr5 (10-387)||(29687463-29687839)
chr5 (187-387)||(29712759-29712958)
chr5 (196-385)||(29695750-29695938)
chr5 (193-281)||(42562726-42562814)
chr5 (188-275)||(178609-178696)
chr5 (216-314)||(1812043-1812141)
[»] chr4 (33 HSPs)
chr4 (178-315)||(48156788-48156925)
chr4 (189-314)||(45372419-45372544)
chr4 (189-314)||(48862832-48862960)
chr4 (189-312)||(45366582-45366708)
chr4 (188-350)||(48170913-48171077)
chr4 (220-312)||(7771026-7771118)
chr4 (223-311)||(7904657-7904745)
chr4 (223-315)||(7238081-7238173)
chr4 (200-272)||(48735719-48735791)
chr4 (189-311)||(48148047-48148172)
chr4 (216-315)||(48891027-48891126)
chr4 (220-309)||(7813102-7813191)
chr4 (220-309)||(7822591-7822680)
chr4 (220-312)||(7789711-7789803)
chr4 (223-315)||(49044590-49044682)
chr4 (220-315)||(7907947-7908042)
chr4 (189-275)||(47207525-47207611)
chr4 (223-316)||(49041498-49041591)
chr4 (189-273)||(45385190-45385274)
chr4 (189-311)||(48898313-48898438)
chr4 (220-309)||(7800259-7800348)
chr4 (217-309)||(33134190-33134285)
chr4 (222-298)||(49048977-49049053)
chr4 (223-315)||(50251169-50251261)
chr4 (220-311)||(7774194-7774285)
chr4 (220-279)||(48902572-48902631)
chr4 (223-349)||(37827322-37827447)
chr4 (193-311)||(48875441-48875559)
chr4 (216-313)||(7765239-7765336)
chr4 (190-275)||(50668635-50668720)
chr4 (189-268)||(48870133-48870212)
chr4 (189-268)||(48885819-48885898)
chr4 (222-311)||(7877344-7877433)
[»] chr8 (6 HSPs)
chr8 (224-315)||(4032277-4032368)
chr8 (216-315)||(15348480-15348579)
chr8 (189-299)||(12199898-12200008)
chr8 (189-299)||(12444326-12444436)
chr8 (189-299)||(12194892-12195002)
chr8 (189-299)||(12439320-12439430)
[»] chr3 (4 HSPs)
chr3 (157-306)||(11006332-11006482)
chr3 (220-350)||(47452237-47452363)
chr3 (189-312)||(11024901-11025024)
chr3 (216-260)||(11015941-11015985)
[»] chr6 (2 HSPs)
chr6 (203-306)||(21980014-21980117)
chr6 (216-387)||(21015394-21015564)
[»] chr1 (4 HSPs)
chr1 (217-314)||(24309796-24309893)
chr1 (203-272)||(24322067-24322136)
chr1 (216-314)||(24340032-24340130)
chr1 (217-272)||(24415456-24415511)
[»] scaffold0508 (1 HSPs)
scaffold0508 (216-314)||(11880-11978)
[»] chr2 (1 HSPs)
chr2 (203-312)||(21425991-21426100)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 29687463 - 29687839
Alignment:
Q  10 tcgaagaaaatattccccaacattactgatgnnnnnnnnnnnnntcatagtcctctaaaattaagacaacatataaaacagagatgggaacccgttaaaa 109  Q
    ||||| |||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29687463 tcgaataaaatattccccaacattactgatgaaaaagaaaaaaatcatagtcctctaaaattaagacaacatataaaacatagatgggaacccgttaaaa 29687562  T
Q  110 cgacaagtaacaaactggtgcaggaaactaaaggaggaagaggcatggatggagacgaagaagacctctatctgcccattgaattgatcattcaaatcct 209  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29687563 cgactagtaacaaactggcgcaggaaactaaaggaggaagaggcatggatggagacgaagaagacctctatctgcccattgaattgatcattcaaatcct 29687662  T
Q  210 tctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaa 309  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29687663 tctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaa 29687762  T
Q  310 cttacccgccaaggcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaac 387  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29687763 ctta-ccgccaatgcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaac 29687839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 187 - 387
Target Start/End: Complemental strand, 29712958 - 29712759
Alignment:
Q  187 attgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctc 286  Q
    ||||| || ||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||||||||||  ||||||||||| || |||||| ||     
T  29712958 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctg 29712859  T
Q  287 actttgcaaattctcattttcaacttacccgccaaggcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaa 386  Q
    | || |||||||| ||||||||||||| |||||||  ||||| ||||||||||||| || |||| |||| |||| |||||||||||||| ||||| ||||    
T  29712858 atttcgcaaattcacattttcaactta-ccgccaaaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaa 29712760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 385
Target Start/End: Original strand, 29695750 - 29695938
Alignment:
Q  196 atcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaa 295  Q
    ||||||||||||||  ||| |||||| || ||||||||||| || ||||| || ||||||||||  ||||| ||||| ||||||||||||||||||||||    
T  29695750 atcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaa 29695849  T
Q  296 attctcattttcaacttac--ccgccaaggcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaa 385  Q
    |||| ||||||||||||||  |||| |   |||||||   ||||||| |||| |||| |||| ||||| ||||||||||||||||| |||||    
T  29695850 attcacattttcaacttaccaccgcta---cacacacgaatagaattatgttgataactccatatcttcaatctctatctatagatcttgaa 29695938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 42562814 - 42562726
Alignment:
Q  193 ttgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctca 281  Q
    |||||||| ||||| |  |||| |||||||||||| |||||||| || ||||| || ||||||||||||||||||||||| || |||||    
T  42562814 ttgatcatccaaatacggctaatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctca 42562726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 178609 - 178696
Alignment:
Q  188 ttgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcat 275  Q
    ||||||||||||| |||||||| ||    ||||| || ||||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  178609 ttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcat 178696  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 1812043 - 1812141
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttac 314  Q
    |||||| ||||||| ||| ||||| | ||| || ||||||||||  ||||||||||| || ||  | || ||||||||||||| |||||||||||||||    
T  1812043 gttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaatccccactttgcaaattatcattttcaacttac 1812141  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 315
Target Start/End: Complemental strand, 48156925 - 48156788
Alignment:
Q  178 tatctgcccattgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatat 277  Q
    ||||||||  |||||||||| |||||||||||| ||  ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || |    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  278 ctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |  |  |||| ||||||||||||||||||||| |||||    
T  48156825 ccgatactcattttgcaaattctcattttcaaattacc 48156788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 45372544 - 45372419
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    ||||||||| |||||||| || |||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | || ||| | |||||     
T  45372544 tgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcat 45372445  T
Q  289 tttgcaaattctcattttcaacttac 314  Q
    ||||||||||| ||||||||| ||||    
T  45372444 tttgcaaattcacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 48862832 - 48862960
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacct 285  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| || ||||   | |||    
T  48862832 tgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcct 48862931  T
Q  286 cactttgcaaattctcattttcaacttac 314  Q
    |||||||||||||| ||||||||||||||    
T  48862932 cactttgcaaattcacattttcaacttac 48862960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 45366708 - 45366582
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacct 285  Q
    ||||||||| || |||||||| |||| |||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||| || ||||   |  |     
T  45366708 tgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattca 45366609  T
Q  286 cactttgcaaattctcattttcaactt 312  Q
    |||||||||||||| ||||||||||||    
T  45366608 cactttgcaaattcacattttcaactt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 350
Target Start/End: Complemental strand, 48171077 - 48170913
Alignment:
Q  188 ttgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacc 284  Q
    ||||||||||  ||||||| || || | |||| |||||||||||||| |||| ||||| ||||||||||||||||||||| |||| || ||||   | ||    
T  48171077 ttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcc 48170978  T
Q  285 tcactttgcaaattctcattttcaacttacccgccaaggcacacactcctagaattctgttcataa 350  Q
    ||||||||||||||| ||||||||| ||| ||||| |  ||||||||| || |||| |||||||||    
T  48170977 tcactttgcaaattcgcattttcaaatta-ccgcctaaacacacactcgtaaaattatgttcataa 48170913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 7771026 - 7771118
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaactt 312  Q
    |||||||||||||||||| | ||||| || ||||||||||||||||||||||| || ||| | |||||||||| |||||| ||||||||||||    
T  7771026 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 7904657 - 7904745
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaact 311  Q
    ||||||||||||||||| ||||| |||||||||||||  ||||||||||| || ||| | ||||||||||||||||| |||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 7238173 - 7238081
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    ||||||||||||||  | ||||| |||||||||||||||||||||||||| || ||| | ||||||||||||||||| ||||| |||| ||||    
T  7238173 gtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaacatacc 7238081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 48735791 - 48735719
Alignment:
Q  200 ttcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 272  Q
    ||||||| ||||| | ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctct 48735719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 48148172 - 48148047
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacct 285  Q
    |||||||||  |||||||||||  || |||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| || ||||   | |||    
T  48148172 tgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcct 48148073  T
Q  286 cactttgcaaattctcattttcaact 311  Q
    ||||| |||||||| |||||| ||||    
T  48148072 cacttcgcaaattcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 48891027 - 48891126
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||| |||| |||||||||||||| ||||| || |||||||||||||||||||||||  | ||  | ||||| ||||||||||| |||||||||||||||    
T  48891027 gttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 48891126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7813102 - 7813191
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaa 309  Q
    |||||||||| ||||||||| ||||||||||||||||| || ||||||||||| || ||| |||| ||||||||||| || || ||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaagtcacaatttcaa 7813191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7822591 - 7822680
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaa 309  Q
    |||||||||| ||||||||| ||||||||||||||||| || ||||||||||| || ||| | || |||||||||||||| || ||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattcacaatttcaa 7822680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 7789711 - 7789803
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaactt 312  Q
    |||||||||||||||||| | ||||| || ||||||||||||||||||||| | || ||  | |||||||||| |||||| ||||||||||||    
T  7789711 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 49044682 - 49044590
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||| ||||||| |||| |||||||||||||||||||  ||||||||||| || |||||| | |||||||||||||| |||||| || |||||    
T  49044682 gtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttgaaattacc 49044590  T

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Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 7907947 - 7908042
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||||||||||||||| ||| ||||||| |||| ||||||| ||||||||||| || |||   || || ||||||||||| |||||||||||||||    
T  7907947 ccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttacc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 47207525 - 47207611
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcat 275  Q
    ||||||||||||   ||||||  || ||||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||    
T  47207525 tgaattgatcatcttaatcctattatagttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcat 47207611  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 49041591 - 49041498
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttaccc 316  Q
    ||||||||||||||  | ||||| || ||||| ||||||||||||||||| || ||| | || || |||||||||||||||||| |||||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttaccc 49041498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 45385274 - 45385190
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctc 273  Q
    ||||||||| || |||||||| |||| |||||| || |||||||| ||||| ||||| |  ||||||||||||||||||||||||    
T  45385274 tgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctctc 45385190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 48898313 - 48898438
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacct 285  Q
    ||||||| |||||||||| || || |   |||| ||||||||||||| ||| |||||||||||||||||||||||||| || || || ||||   |  |     
T  48898313 tgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcc 48898412  T
Q  286 cactttgcaaattctcattttcaact 311  Q
    |||||||||||||| |||||||||||    
T  48898413 cactttgcaaattcacattttcaact 48898438  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7800259 - 7800348
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaa 309  Q
    |||||||||| ||||||||| ||||||||||||||||| || |||||||||||  | ||| | || | |||||||||||| || ||||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattcacaatttcaa 7800348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 33134285 - 33134190
Alignment:
Q  217 ttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatc---tcaacctcactttgcaaattctcattttcaa 309  Q
    |||||||||||||||||||| || ||||| || ||||||||| |||| |||||||| || ||   | | ||||||||||||||||| |||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacattttcaa 33134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 49049053 - 49048977
Alignment:
Q  222 ggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaatt 298  Q
    ||||| ||||||| |||| |||||||||||||||||||  ||||||||||| || |||||| | || ||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccattttgcaaatt 49048977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 50251261 - 50251169
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||||| |||||||||  || ||||| |||| |||||||||||||||||| || ||| | || |||| ||||||||  |||||||||||||||    
T  50251261 gtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 50251169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 7774285 - 7774194
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaact 311  Q
    ||||||||||||||||| |  ||||| ||||||||||||   ||||||||||| || ||| | || || ||||||||||| |||||||||||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaact 7774194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 48902572 - 48902631
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatct 279  Q
    ||||| |||||||| || || ||||| |||||||||||||||||||||||||| ||||||    
T  48902572 ccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatct 48902631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 37827447 - 37827322
Alignment:
Q  223 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacccgccaag 322  Q
    ||||||||||||||| | || |  || ||||||||||| |||||  |||| |||||| | ||  ||||||||||||| ||||||||||||| | ||||      
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaactta-cggccaca 37827349  T
Q  323 gcacacactcctagaattctgttcata 349  Q
    ||||| |||| | ||||||||||||||    
T  37827348 gcacaaactcgtcgaattctgttcata 37827322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 48875441 - 48875559
Alignment:
Q  193 ttgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttg 292  Q
    |||||| ||||||| || || | |||| | || |||||||| || || ||||| || ||||| |||||||||||||||||||| ||  |||| || |||     
T  48875441 ttgatcgttcaaattctgctgaggttatcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccatttta 48875540  T
Q  293 caaattctcattttcaact 311  Q
    ||||||| |||||||||||    
T  48875541 caaattcacattttcaact 48875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 7765239 - 7765336
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaactta 313  Q
    ||||||||||||||||||  ||   ||||||||  |||||||||  ||||||||| | || ||| | ||||||||||||||||| ||||| |||||||    
T  7765239 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactta 7765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 50668635 - 50668720
Alignment:
Q  190 gaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcat 275  Q
    |||||||||||||||||  |  | | ||| || ||||| | ||||||||| |||||||| |||||||| |||||||||||||||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcat 50668720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 48870133 - 48870212
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggtttt 268  Q
    |||||||||  ||||||| || || | | |||||||||| |||||||| || ||||| || |||||||||||||||||||    
T  48870133 tgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggtttt 48870212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 48885819 - 48885898
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggtttt 268  Q
    |||||||||  ||||||| || || | | |||||||||| |||||||| || ||||| || |||||||||||||||||||    
T  48885819 tgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggtttt 48885898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 7877344 - 7877433
Alignment:
Q  222 ggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaact 311  Q
    |||||||||||||||||| ||||| ||  ||||||||   ||||||||||| || ||| | ||  | ||||||||||| |||||||||||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaact 7877433  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 4032368 - 4032277
Alignment:
Q  224 tgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||||||||||||||| ||||||||||||||||| ||||||||  |||| |||||| | ||||||||||||||||| ||||||||| |||||    
T  4032368 tgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctgatcctcactttgcaaattcgcattttcaaattacc 4032277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 15348480 - 15348579
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||| | ||| |||| |||||||| ||||||||| |||||    
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 15348579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 12199898 - 12200008
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| |||||||||||||| ||||||||||| || ||| | ||||||    
T  12199898 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcac 12199997  T
Q  289 tttgcaaattc 299  Q
    |||||||||||    
T  12199998 tttgcaaattc 12200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 12444326 - 12444436
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| |||||||||||||| ||||||||||| || ||| | ||||||    
T  12444326 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcac 12444425  T
Q  289 tttgcaaattc 299  Q
    |||||||||||    
T  12444426 tttgcaaattc 12444436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 12194892 - 12195002
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| ||  |||||||||| ||||| ||||| || ||| | || |||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12194991  T
Q  289 tttgcaaattc 299  Q
    |||||||||||    
T  12194992 tttgcaaattc 12195002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 12439320 - 12439430
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    |||||| |||||||||||||| || | ||| ||||||||||||||| || | ||||| ||  |||||||||| ||||| ||||| || ||| | || |||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12439419  T
Q  289 tttgcaaattc 299  Q
    |||||||||||    
T  12439420 tttgcaaattc 12439430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 11006482 - 11006332
Alignment:
Q  157 gatggagacgaagaa-gacctctatctgcccattgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgt 255  Q
    ||||||||||||||  | ||| ||||||||   |||||||||||| |||||| |  | | ||| ||||||||||| |||||||| |||||||||||||||    
T  11006482 gatggagacgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgt 11006383  T
Q  256 aagtcttggttttctctcatatctcaacctcactttgcaaattctcatttt 306  Q
    ||||| |||||  |||| || ||| | |||||||||||||| || ||||||    
T  11006382 aagtcatggttaactcttatctctgatcctcactttgcaaaatcgcatttt 11006332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 47452363 - 47452237
Alignment:
Q  220 ccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacccgcc 319  Q
    ||||||||||||||| |||||||||||||  ||| |||||| ||||||||||| || ||| | |||| |||||||||  | |||||| |||||| |||||    
T  47452363 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaactta-ccgcc 47452265  T
Q  320 aaggcacacactcctagaattctgttcataa 350  Q
       |||||||||| ||||||| |||| ||||    
T  47452264 ---gcacacactcgtagaattgtgtttataa 47452237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 11025024 - 11024901
Alignment:
Q  189 tgaattgatcattcaaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 288  Q
    |||||||||||| |||||| |  | | |||||||||||||||||| ||||| ||||| || ||||||||||| |||||  |||| || ||| | | | ||    
T  11025024 tgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataac 11024925  T
Q  289 tttgcaaattctcattttcaactt 312  Q
    |||||||| || |||||| |||||    
T  11024924 tttgcaaaatcgcattttgaactt 11024901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 11015985 - 11015941
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtc 260  Q
    |||||||||||||||||| ||||| ||||| || |||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtc 11015941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 21980117 - 21980014
Alignment:
Q  203 aaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctca 302  Q
    ||||||| |||| || ||| || ||||||||   ||| ||||||||||||||||||||||||||||||||||| ||||| ||  ||||||| ||||| ||    
T  21980117 aaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaattcaca 21980018  T
Q  303 tttt 306  Q
    ||||    
T  21980017 tttt 21980014  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 387
Target Start/End: Original strand, 21015394 - 21015564
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 315  Q
    ||||||||| | ||||||| |||| |||||||||||||||||||  | ||||||||| || |||||| | |||||||||| ||| |||||| || ||| |    
T  21015394 gttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaaatta-c 21015492  T
Q  316 cgccaaggcacacactcctagaattctgttcat---aaatccagatcttgaatctctatctatagattttgaaac 387  Q
     |||   ||||||| |||||||||| |||||||   ||||||||| |||||| ||| ||  || |||||||||||    
T  21015493 tgcc---gcacacaatcctagaattttgttcatgtcaaatccagaccttgaaactcgattgatcgattttgaaac 21015564  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 24309796 - 24309893
Alignment:
Q  217 ttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttac 314  Q
    |||||||| ||||||||||| || ||||| |  ||||||||||  ||||||||||| || ||| |  |||||||||||||||| ||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 24322067 - 24322136
Alignment:
Q  203 aaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 272  Q
    |||||||||||| ||| | ||||||||||||||| || ||||| || |||||||||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctct 24322136  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 24340032 - 24340130
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttac 314  Q
    ||||||||| ||||||||||| || ||||| | |||||||||||| |||||||| || || ||| |   ||||||||||||||| || |||||| ||||    
T  24340032 gttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagttac 24340130  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 24415456 - 24415511
Alignment:
Q  217 ttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 272  Q
    |||||||| ||||||||||| || ||||| || ||| |||||||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctct 24415511  T

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Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 11880 - 11978
Alignment:
Q  216 gttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttac 314  Q
    ||||||| | ||||||||||| || ||||| |  ||||||||||| ||||||||||| || ||| |   ||||||||||||||| ||||||||||||||    
T  11880 gttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 21425991 - 21426100
Alignment:
Q  203 aaatccttctaaagttaccggtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctca 302  Q
    |||||||||| | ||| ||||||||| || |  |||||| || |||||| |||||||  ||| ||||| |||| ||||| ||||| ||| ||| ||| ||    
T  21425991 aaatccttctgaggttgccggtgaagactttactacgctgcaggtgtgtctgtaagttatggctttctatcatctctcatcctcatttttcaacttcaca 21426090  T
Q  303 ttttcaactt 312  Q
    ||||||||||    
T  21426091 ttttcaactt 21426100  T

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