View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_36 (Length: 396)

Name: NF5400_low_36
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_36
NF5400_low_36
[»] chr3 (3 HSPs)
chr3 (11-365)||(21076128-21076486)
chr3 (11-285)||(21021876-21022152)
chr3 (291-374)||(21022180-21022265)
[»] scaffold0025 (2 HSPs)
scaffold0025 (176-284)||(50403-50511)
scaffold0025 (19-118)||(50544-50643)
[»] chr6 (2 HSPs)
chr6 (11-153)||(5474022-5474166)
chr6 (11-136)||(13167611-13167738)
[»] chr4 (1 HSPs)
chr4 (11-152)||(22310620-22310763)
[»] chr8 (1 HSPs)
chr8 (11-150)||(8777096-8777237)
[»] chr1 (3 HSPs)
chr1 (11-153)||(1345559-1345703)
chr1 (151-285)||(28385407-28385540)
chr1 (291-345)||(28385325-28385379)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 21076128 - 21076486
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  21076128 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcggtaaagctgatgctttagttgcaggggctattggttctt 21076227  T
Q  111 gaatctttatgt--ttacagtcgattcatacaccattatcgggtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggcttt 208  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  21076228 gaatctttatgtgtttatagtcgattcatacaccattctcgggtttcattataatcaggcgtgtctctggttactttggttcatcaatgatcgtggcttt 21076327  T
Q  209 ttacacatctctttattttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgatgtgtaatttttctaaattttcgtctggttagct 308  Q
    ||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  21076328 ttacacatctctttattttgcaatcctagttttgggtcccacgctgggcttgctgggttgtgttgatgtgtaatttttctagattttcgtctagttagct 21076427  T
Q  309 actatataccactttttgttattaatgttgtatta--ctattagggctgatacgtggtt 365  Q
    | |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  21076428 attatataccactttttgttattagtgttgtattaccctattagggctgatacgtggtt 21076486  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 21021876 - 21022152
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| |||||||| |||||||| || |||||||| |||||| ||||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  21021876 caaagcttgggatcaggtttaataacaatatttctcgcttgggttggactccgaagggtcggtaaagctgatgcttttgttgcaggggctattggttctt 21021975  T
Q  111 gaatctttatgttta--cagtcgattcatacaccattatcgggtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggcttt 208  Q
     ||||||||||| |   ||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  21021976 aaatctttatgtgtcggcagtcgaatcatacaccattctcaggttttattataatcaggtgtgtctctggttactttggttcttcaatgattgcggcttt 21022075  T
Q  209 ttacacatctctttattttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgatgtgtaatttt 285  Q
    || |||||||||||||||||||||| ||||||| |||||   |||||||||||||||||||||||||||||||||||    
T  21022076 ttgcacatctctttattttgcaatcctggtttcaggtcctgggttgggcttgctgggttgtgttgatgtgtaatttt 21022152  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 21022180 - 21022265
Alignment:
Q  291 attttcgtctggttagctactatataccactttttgttattaatgttgtatta--ctattagggctgatacgtggttgttgggtca 374  Q
    |||||||||| |||||||| |||||||||||||||||||||  | ||||||||  ||||||||||||||  ||||||| |||||||    
T  21022180 attttcgtctagttagctattatataccactttttgttattcgttttgtattaccctattagggctgatgtgtggttgctgggtca 21022265  T

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Target: scaffold0025 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 50511 - 50403
Alignment:
Q  176 tggttactttggttcatcaatgattgtggctttttacacatctctttattttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgat 275  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  50511 tggttactttggttgatcaatggttgcggctttttacacatctctttattttgcaatctcggttttgggtcccacgttgggcttgctgagttgtgttgat 50412  T
Q  276 gtgtaattt 284  Q
    |||||||||    
T  50411 gtgtaattt 50403  T

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Target: scaffold0025; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 50643 - 50544
Alignment:
Q  19 gggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaatcttt 118  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||  | ||||||||||| ||||||||| ||||||||| |||||    
T  50643 gggatcggttttaatgaagatatttttggcttggtttggactcgaaagggtcagtaaagttgttgcttttgttgtaggggctataggttcttgattcttt 50544  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 5474022 - 5474166
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||| |||||||||    
T  5474022 caaagcttgggatcggttttaatgaagatatttcttgcttggtttagactcgaaagggtcggtaaagctgttgcttttgttgcaggggcttttggttctt 5474121  T
Q  111 gaatcttt--atgtttacagtcgattcatacaccattatcgggtt 153  Q
    |||||| |   |||| |||||| |||||||||||||| |||||||    
T  5474122 gaatctctcggtgttaacagtcaattcatacaccattctcgggtt 5474166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 13167738 - 13167611
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| || |||| || |||||||| ||||||||||||||||||||||||| ||||| || ||||||| | ||||||||||||| ||||| || ||||||    
T  13167738 caaagattcggattggttttaatgatgatatttcttgcttggtttggactcaaaaggatcggtaaagctgctgcttttgttgcaagggcttttcgttctt 13167639  T
Q  111 gaa--tctttatgtttacagtcgattca 136  Q
    |||  ||| | |||| ||||||||||||    
T  13167638 gaatttctctgtgttgacagtcgattca 13167611  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 22310763 - 22310620
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| |||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||||||| | |||||||||    
T  22310763 caaagcttgggatcagttttaatgaagatatttcttgcttggtttggactcgaaagcgtcagtatagctgctgctttcgttgcaggggattttggttctt 22310664  T
Q  111 gaa--tctttatgtttacagtcgattcatacaccattatcgggt 152  Q
    |||  ||| | |||| ||||||||||||||||||||| ||||||    
T  22310663 gaatctctctgtgttgacagtcgattcatacaccattctcgggt 22310620  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 8777237 - 8777096
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| |||||||| | |||| ||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||| |||||||||    
T  8777237 caaagtttgggatcagttttactgaagatatttcttgcttggtttggactcgaaagggtcggtatagctgatgctttcgttgcaggggcttttggttctt 8777138  T
Q  111 gaa--tctttatgtttacagtcgattcatacaccattatcgg 150  Q
    |||  ||| | |||| |||||||||||||| |||||| ||||    
T  8777137 gaatctctctgtgttgacagtcgattcatagaccattctcgg 8777096  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 1345703 - 1345559
Alignment:
Q  11 caaaggttgggatcgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttctt 110  Q
    ||||| |||||||||  |||||||| |||||||||||||||||||||| |||||||| || ||||| | | ||||||||| |  | |||| |||||||||    
T  1345703 caaagcttgggatcgattttaatgaagatatttcttgcttggtttggagtcgaaaggatcggtaaaactgctgcttttgtggtcgaggcttttggttctt 1345604  T
Q  111 gaat--ctttatgtttacagtcgattcatacaccattatcgggtt 153  Q
    ||||  |||| |||| ||||||||||||||||||||| |||||||    
T  1345603 gaatcactttgtgttgacagtcgattcatacaccattctcgggtt 1345559  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 285
Target Start/End: Complemental strand, 28385540 - 28385407
Alignment:
Q  151 gtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggctttttacacatctctttattttgcaatcttggtttcgggtcccac 250  Q
    ||||||||||||||| |||||| |||  ||||||||| || ||||||||||   ||||||||||| |  |||| ||||||||| |||||| | ||| | |    
T  28385540 gtttcattataatcaagtgtgtatctaattactttggatcgtcaatgattgcaactttttacacaccattttactttgcaatc-tggttttgagtctcgc 28385442  T
Q  251 gttgggcttgctgggttgtgttgatgtgtaatttt 285  Q
    |||||   |||||||||||||||||||||||||||    
T  28385441 gttggatctgctgggttgtgttgatgtgtaatttt 28385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 28385379 - 28385325
Alignment:
Q  291 attttcgtctggttagctactatataccactttttgttattaatgttgtattact 345  Q
    |||||||||| |||||||| ||||||| ||||||||||| | ||| |||||||||    
T  28385379 attttcgtctagttagctattatatacaactttttgttaattatggtgtattact 28385325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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