View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_38 (Length: 394)
Name: NF5400_low_38
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 378
Target Start/End: Original strand, 7708404 - 7708759
Alignment:
| Q |
25 |
attattaaataaaaaaggaactaaaccatgacagacataaatcaaaatccatgcaaaacaaatttatgatcattcatgaattttgtgtgactctaaattt |
124 |
Q |
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| T |
7708404 |
attattaaataaaaaaggaactaaaccatgacagacataaatcaaaatccatgcaaaacaaatttatgatcattcatgaattttgtgtcactctaaattt |
7708503 |
T |
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| Q |
125 |
taagtgaagttttaagtatttaaatagagatgaatgtaccaatatggagtgacacaaagtgacacnnnnnnnaaacaatcaatttcataatattatttgt |
224 |
Q |
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| T |
7708504 |
taagtgaagttttaagtatttaaatagagatgaatgtaccaacatggagtgacgcaaagtgacactttttttaaacaatcaatttcataatattatttgt |
7708603 |
T |
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| Q |
225 |
tcttctttcttcnnnnnnnnnnnnnnnnnctaat--taatttgttagtatttgttggaggcggaaattgaaacaatgactattcttactattctactact |
322 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
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| T |
7708604 |
tcttctttcttcaaaaataaaaaataaaattaatgataatttgttagtatttgttggaggcggaaattgaaacaataactattcttaccattccactact |
7708703 |
T |
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| Q |
323 |
aaactcatttatccccgtcactaagtcagacttatatctattgtgatatatacttg |
378 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7708704 |
aaactcatttatccccgtcactaagtcagtcttatatctattgtgatatatacttg |
7708759 |
T |
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