View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_41 (Length: 389)

Name: NF5400_low_41
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_41
NF5400_low_41
[»] chr5 (4 HSPs)
chr5 (1-347)||(40519265-40519611)
chr5 (93-241)||(40508315-40508463)
chr5 (1-86)||(41782033-41782118)
chr5 (13-76)||(40510566-40510629)
[»] chr2 (4 HSPs)
chr2 (1-88)||(18163560-18163647)
chr2 (283-342)||(14131248-14131306)
chr2 (283-342)||(31264850-31264908)
chr2 (283-340)||(20143062-20143118)
[»] chr6 (1 HSPs)
chr6 (283-341)||(34713594-34713651)
[»] chr4 (2 HSPs)
chr4 (282-341)||(16528659-16528717)
chr4 (283-341)||(19663375-19663432)
[»] chr7 (1 HSPs)
chr7 (280-349)||(20125675-20125743)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40519611 - 40519265
Alignment:
Q  1 ttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgtactagggtgtcattttgatttgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  40519611 ttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtgaccatctggtatataaatgtaatagggtgtcattttgatttgcag 40519512  T
Q  101 gattttgagaatgaagaattggtgagaatacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtacaacaaggatcttgtc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40519511 gattttgagaatgaagaattggtgagattacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtacaacaaggatcatgtc 40519412  T
Q  201 ctatttgtagaacttacgttcctgaccatattaatttgtgaatagtttcgtatttgttgtaaaatagataggttaagc-aattgggaaatgatagataca 299  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  40519411 ctatttgtagaacttacgttcctgaccatattaattcgtgaatagtttcgtatttgttgtaaaatagataggttaagcaaattgggaaatgataaataca 40519312  T
Q  300 ccgacaaaaattatcaaagaaaattttaagatagtggatttgccaata 347  Q
      ||||||||||||| ||||||||||||||| |||| |||||||||||    
T  40519311 gtgacaaaaattatc-aagaaaattttaagacagtgtatttgccaata 40519265  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 40508463 - 40508315
Alignment:
Q  93 atttgcaggattttgagaatgaagaattggtgagaatacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtacaacaagg 192  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||    
T  40508463 atttgcaggattttgagaatgaagaattggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaagg 40508364  T
Q  193 atcttgtcctatttgtagaacttacgttcctgaccatattaatttgtga 241  Q
    ||| ||||| |||||||||||||| |||  ||| || ||||||| ||||    
T  40508363 atcatgtcccatttgtagaacttatgttgttgatcacattaattcgtga 40508315  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41782033 - 41782118
Alignment:
Q  1 ttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgtactagggtgtc 86  Q
    |||||||| |||||||||||||||  |||||||||||||||||| ||||||| ||||||| |||||||||| |||| |||||||||    
T  41782033 ttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc 41782118  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 40510629 - 40510566
Alignment:
Q  13 atgagaccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgta 76  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||| |||| |||| ||||    
T  40510629 atgagaccatgggaaataattgtcacattaaattgttgatgtgaccatcgggtagataagtgta 40510566  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18163647 - 18163560
Alignment:
Q  1 ttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatctggtatataactgtactagggtgtcat 88  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||    
T  18163647 ttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggtatataaatttattagggtgtcat 18163560  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 14131306 - 14131248
Alignment:
Q  283 gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc 342  Q
    |||||||||||||||||  ||||||| |||| || |||||||||||||||||| ||||||    
T  14131306 gggaaatgatagatacagtgacaaaatttatgaa-gaaaattttaagatagtgtatttgc 14131248  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 31264908 - 31264850
Alignment:
Q  283 gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc 342  Q
    |||||||||||||||||  ||||||| ||||||||  |||||||||||||||| ||||||    
T  31264908 gggaaatgatagatacagtgacaaaatttatcaaa-caaattttaagatagtgtatttgc 31264850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 20143118 - 20143062
Alignment:
Q  283 gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggattt 340  Q
    |||||||||||||||||  ||||||| ||||| |||||||||| ||||||||| ||||    
T  20143118 gggaaatgatagatacagtgacaaaatttatc-aagaaaatttcaagatagtgtattt 20143062  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 34713651 - 34713594
Alignment:
Q  283 gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg 341  Q
    |||||||||||||||||  ||||||| ||||||| |||||||||||||||||| |||||    
T  34713651 gggaaatgatagatacagtgacaaaatttatcaa-gaaaattttaagatagtgtatttg 34713594  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 16528717 - 16528659
Alignment:
Q  282 tgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg 341  Q
    |||||||||||||||||| |||||| |  |||||| |||||||||||||||||| |||||    
T  16528717 tgggaaatgatagatacagcgacaacatgtatcaa-gaaaattttaagatagtgtatttg 16528659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 19663432 - 19663375
Alignment:
Q  283 gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg 341  Q
    |||||||||||||||||  ||||||| ||||| ||||||||||||||| |||| |||||    
T  19663432 gggaaatgatagatacagtgacaaaatttatc-aagaaaattttaagagagtgtatttg 19663375  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 20125743 - 20125675
Alignment:
Q  280 attgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgccaatacc 349  Q
    ||||||||||||||||||||  ||||||  ||||| |||||||||| |||| |||| |||||| ||||||    
T  20125743 attgggaaatgatagatacaatgacaaattttatc-aagaaaatttgaagacagtgtatttgctaatacc 20125675  T

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