View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_43 (Length: 380)
Name: NF5400_low_43
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 6705769 - 6706126
Alignment:
| Q |
21 |
ttaatcttaacacttataagtaacaagacactaccttccccataatacaacatcataggtactaaaagagtgcaagcaactaaaagtgccaatacaaaag |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
6705769 |
ttaatcttaacacttataagtaacaagacactaccttctccataacacaacatcataggtcctaaaagagtgcaagcaagcaaaagtgccaaaacaaaag |
6705868 |
T |
|
| Q |
121 |
gtaacctacacattacatgatcctctgccacacatgttttcccttagacctctaatttcgtaagtcgatgcctacaactacattcaagtaatatatggct |
220 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
6705869 |
gtaacctacacataacatgatcctctggcacacatgttttcccttagacctctaatttcgtaagtccatgcctacaaccacattcaagtaatatatggct |
6705968 |
T |
|
| Q |
221 |
taaactcaacactaaccacacctaaaattatgcagaagcagtatgtcaaaaaccataacagcacaaaattgaacaaccattaaataagctttacacattg |
320 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6705969 |
taaactcaacactaaccacacctaaaattatgcataagcagtatgtcaaaaaccatagcagcacaaaattgaacaaccattaaataagctttacacattg |
6706068 |
T |
|
| Q |
321 |
aatacaacaacagaacacaaacatgacaaattaagaccatcatgcactctctaaacca |
378 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
6706069 |
aatacaccaacagaacacaaacacgacaaattaagaccatcctgcactccctaaacca |
6706126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 40681145 - 40681518
Alignment:
| Q |
21 |
ttaatcttaacacttataagtaacaagacactaccttccccataatacaacatcataggtactaaaagagtgcaagcaactaaaagtgccaatacaaaag |
120 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
40681145 |
ttaatcttaacacttgtaagtaacaagacactaccttccccataacacaacatcataggtactaaaagagtgcaagcaaccaaaaatgccaaaacaaaag |
40681244 |
T |
|
| Q |
121 |
gtaacctacacattacatgatcctctgccacacat---------------gttttcccttagacctctaatttcgtaagtcgatgcctacaactacattc |
205 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
40681245 |
gtaacctacacataacatgatcctctgccacacattgctccacctaacatgttttcccttagacctctaatttcgtaagtccatgcctacaaccacattc |
40681344 |
T |
|
| Q |
206 |
aagtaatatatggcttaaactcaacactaacc-acacctaaaattatgcagaagcagtatgtcaaaaaccataacagcacaaaattgaacaaccattaaa |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
40681345 |
aagtaatatatggcttaaactcaacactaacccacacctaaaattatgcagaagcagtatgtcaaaaaccatagcagcaccaaattgaacaaccattaaa |
40681444 |
T |
|
| Q |
305 |
taagctttacacattgaatacaacaacagaacacaaacatgacaaattaagaccatcatgcactctctaaacca |
378 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
40681445 |
taagctttacacattgaatacaccaacagaacacaaacatgacaaattaagaccatcctgcactccctaaacca |
40681518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 15496147 - 15496518
Alignment:
| Q |
21 |
ttaatcttaacacttataagtaacaagacactaccttccccataatacaacatcataggtactaaaagagtgcaagcaactaaaagtgccaatacaaaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
15496147 |
ttaatcttaacacttataagtaacaagacactaccttccccataatacaacatcataggtactaaaagagtgctagcaaccaaaagtgccaaaacaaaag |
15496246 |
T |
|
| Q |
121 |
gtaacctacacattacatgatcctctgccacacat---------------gttttcccttagacctctaatttcgtaagtcgatgcctacaactacattc |
205 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
15496247 |
gtaacctacacataacaagaccctctgccacacattgctccacctaacatgttttcccttagacctctaatttcgtaagtccatgcctacaaccacattc |
15496346 |
T |
|
| Q |
206 |
aagtaatatatggcttaaactcaacactaacc-acacctaaaattatgcagaagcagtatgtcaaaaaccataacagcacaaaattgaacaaccattaaa |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
15496347 |
aagtaatat--ggcttaaactcaacactaacccacacctaaaattatgcagaagcggtatgtcaaaaaccatagcagcatcaaattgaacaaccattaaa |
15496444 |
T |
|
| Q |
305 |
taagctttacacattgaatacaacaacagaacacaaacatgacaaattaagaccatcatgcactctctaaacca |
378 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15496445 |
taagctttacacattgaatacaccaacagaacacaaacatgacaaattaagaccatcatgcactccctaaacca |
15496518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 19603422 - 19603366
Alignment:
| Q |
123 |
aacctacacattacatgatcctctgccacacatgttttcccttagacctctaatttc |
179 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
19603422 |
aacctacacataacatgatcctccacctaacatgttttcccttagacctctaatttc |
19603366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 19603317 - 19603269
Alignment:
| Q |
215 |
atggcttaaactcaacactaacc-acacctaaaattatgcagaagcagta |
263 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
19603317 |
atggcttaaactcaacactaaccgacacct-aaattatgcagaagcagta |
19603269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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