View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_44 (Length: 379)
Name: NF5400_low_44
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 612242 - 612499
Alignment:
| Q |
1 |
tggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccagtttctttatgcatgcaactttggtcttttttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
612242 |
tggttctctttactatatgcctgaatcatgaatgtttgatatataccagctcattgatttatccggtttctttatgtatgcaactttggtcttgtttctt |
612341 |
T |
|
| Q |
101 |
ataattgtgtcgagtatcct---aatggccagatatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatatctttacatag |
197 |
Q |
| |
|
|||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
612342 |
ataattctgtcaagtatccttctaatggtcagagatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatatccttacagag |
612441 |
T |
|
| Q |
198 |
ctaaactcacgttactatattatattgaatttttcaaattcatgagttatttctatac |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
612442 |
ctaaactcacgttactatattatattaaatttttcaaattcatgagttatttctatac |
612499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 264 - 364
Target Start/End: Original strand, 612528 - 612628
Alignment:
| Q |
264 |
catatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
612528 |
catatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttt |
612627 |
T |
|
| Q |
364 |
t |
364 |
Q |
| |
|
| |
|
|
| T |
612628 |
t |
612628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 3350759 - 3350804
Alignment:
| Q |
132 |
atcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
177 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
3350759 |
atcacacattttaaatgtagaaaaatagggtgtttggggttcgaac |
3350804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 31298657 - 31298701
Alignment:
| Q |
133 |
tcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
177 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| |||||||||||| |
|
|
| T |
31298657 |
tcacacattttaaatatagagaaataggatgtctgaggttcgaac |
31298701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University