View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_45 (Length: 378)
Name: NF5400_low_45
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 42677288 - 42676935
Alignment:
| Q |
15 |
aaaaatacctagaagcaaagagacactacgatacgaaactcagaatttgttcatatagtcactgaccttctcaaacacttcctttgatcaagaataaggg |
114 |
Q |
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| T |
42677288 |
aaaaatacctagaagcaaagagatactatgacatgaaactcagaatttgttcatatagctactgaccttcttaaacacttcctttgatcaagaataaggg |
42677189 |
T |
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| Q |
115 |
ctttgtttaggagcacgatcagcaaagaataagggttttatgagagagagaaggagcacgatcaccaaagtgtgatcgatattagtaatgactaatgaca |
214 |
Q |
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| T |
42677188 |
ctttgtttaggagcacgatcagcaaagaataagggttttatgagagagagaaggagcacgatcaccaaagtgtgatcgatattagtaatgactaatgaca |
42677089 |
T |
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| Q |
215 |
gggaaagtggaggaaagacgctatatattgcttagagtggtctccaagtttgtcataaaaagatttactaattatttgattcaaa--tataacttttata |
312 |
Q |
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| T |
42677088 |
gggaaagtggaggaaagacgctatatattgcttagagtggtctccaagtttgtcataaaaagatttactaattatttgattcaaatatataacttttata |
42676989 |
T |
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| Q |
313 |
aaaagatttggttagtatttatttcattgaa----atagaacttttagagggaatatt |
366 |
Q |
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| T |
42676988 |
aaaagatttggtta----ttatttcattgaaatatatataacttttagagggaatatt |
42676935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 54704911 - 54704951
Alignment:
| Q |
50 |
aaactcagaatttgttcatatagtcactgaccttctcaaac |
90 |
Q |
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| T |
54704911 |
aaactcagaatttgttcctatagcctctgaccttctcaaac |
54704951 |
T |
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