View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_5 (Length: 672)
Name: NF5400_low_5
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 168 - 654
Target Start/End: Complemental strand, 30935549 - 30935073
Alignment:
| Q |
168 |
caagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnncctcaactctgcatcacagaggatgtgcaatgaccctgtaaggttgaggact |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| | | |||| || |
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| T |
30935549 |
caagtaaacatacatagaaatattgaaattctaatcagcctttttttccttcaactctgcatcacagaggacttgcaatgaccctatgaagttgcgg--- |
30935453 |
T |
|
| Q |
268 |
tgaggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctat |
367 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30935452 |
-----caatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctat |
30935358 |
T |
|
| Q |
368 |
gagcaacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaa |
467 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
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| T |
30935357 |
gagctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaa |
30935258 |
T |
|
| Q |
468 |
aaaatgaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaattttttgaaagatcacaatagacgttgggttta |
567 |
Q |
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|||| |||||||||| |||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||| ||||||||| |
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| T |
30935257 |
aaaa--aatgaatgaatagacaagatagtctctgaatttgtaaatatcgttcaatttagtctttgaatttttcgtaagatcacagtagactttgggttta |
30935160 |
T |
|
| Q |
568 |
ttttgcgttattcagtttcatctatccgttaacttcaaacgttatctatggtgatgtgtgatgttgaataatgacatgacagtgtac |
654 |
Q |
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| T |
30935159 |
ttttgcgttatttggtttcatctatccgttaacttcaaacgttatttatggtgatgtgcgatgttaaacgatgacatgacagtgtac |
30935073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 274 - 527
Target Start/End: Complemental strand, 30994360 - 30994106
Alignment:
| Q |
274 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
373 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
|
| Q |
374 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctga-aaaaat |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||| ||| |||||| ||||| |
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| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaa |
30994161 |
T |
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| Q |
473 |
gaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagt |
527 |
Q |
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||| |||| ||| | || ||||||| |||||||||||||||| ||||||| |
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| T |
30994160 |
ctttgagtgaatagaaaatttagtctctgagtttgtaactatcgttcaatttagt |
30994106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 30966450 - 30966348
Alignment:
| Q |
15 |
tatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgttttta |
114 |
Q |
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||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
30966450 |
tatacacattaatacagaaagatgttctaatagtaattcaatgtatcaaaattgcaaacacatccaactttagtcggttttgttcttgaatatgttttta |
30966351 |
T |
|
| Q |
115 |
gct |
117 |
Q |
| |
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||| |
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| T |
30966350 |
gct |
30966348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 30957324 - 30957225
Alignment:
| Q |
7 |
tcgaagaatatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaata |
106 |
Q |
| |
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||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
30957324 |
tcgaataatatacacattaatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaata |
30957226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 380 - 540
Target Start/End: Complemental strand, 30965507 - 30965348
Alignment:
| Q |
380 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaa |
479 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| || |||||||| ||| |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa-atttgag |
30965409 |
T |
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| Q |
480 |
tgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaatttttt |
540 |
Q |
| |
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|||| ||| | || ||||||||||||||||||| | || ||||||| | |||||||||| |
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| T |
30965408 |
tgaatagaaaatttagtctctgaatttgtaactattggtcaatttagtttctgaatttttt |
30965348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 30936148 - 30936046
Alignment:
| Q |
25 |
aatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgtttttagcttgtcaaa |
124 |
Q |
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|||||| ||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||| |
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| T |
30936148 |
aatacacaaaaatattctaatcgtacttgaatgtatcaacattgcaaacacatccaaatttagtcagtttggttcttaaatatgtatttagctactcaaa |
30936049 |
T |
|
| Q |
125 |
tta |
127 |
Q |
| |
|
||| |
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| T |
30936048 |
tta |
30936046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 30965662 - 30965503
Alignment:
| Q |
166 |
cacaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnncctcaactctgcatcacagaggatgtgcaatgaccctgtaaggttgagga |
265 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||| |||||||||| || ||||||| ||||||||||||| | |||||| ||| |
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| T |
30965662 |
cacaagtaaacatacatagaaaaattggaattctaatcagcctttttttg--tcaactctgcttcgcagaggacgtgcaatgaccctatgaggttgggga |
30965565 |
T |
|
| Q |
266 |
cttgaggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
335 |
Q |
| |
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|||| |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
30965564 |
--------aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 617
Target Start/End: Complemental strand, 30994081 - 30994045
Alignment:
| Q |
581 |
agtttcatctatccgttaacttcaaacgttatctatg |
617 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
30994081 |
agtttcatctctccgttaacttcaaacgttatctatg |
30994045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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