View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_50 (Length: 350)

Name: NF5400_low_50
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_50
NF5400_low_50
[»] chr5 (13 HSPs)
chr5 (56-203)||(11049560-11049722)
chr5 (120-209)||(10218450-10218539)
chr5 (121-300)||(10610015-10610194)
chr5 (122-301)||(10563331-10563510)
chr5 (174-301)||(10764875-10765002)
chr5 (250-335)||(11049719-11049811)
chr5 (179-303)||(10718681-10718805)
chr5 (16-81)||(10218354-10218419)
chr5 (133-300)||(10742439-10742606)
chr5 (122-303)||(10748741-10748922)
chr5 (250-303)||(10549095-10549148)
chr5 (264-301)||(10557224-10557261)
chr5 (245-294)||(10594069-10594118)
[»] chr6 (5 HSPs)
chr6 (122-301)||(12956382-12956561)
chr6 (122-282)||(12930599-12930759)
chr6 (175-288)||(12897882-12897995)
chr6 (175-301)||(12905490-12905617)
chr6 (122-288)||(12946958-12947124)
[»] chr2 (1 HSPs)
chr2 (175-301)||(17925185-17925311)
[»] chr3 (1 HSPs)
chr3 (56-105)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 11049560 - 11049722
Alignment:
Q  56 gcatttgttttggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga---------------aacatgttgggtggaagag 140  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggagattggggaaggcatgaaacatgttgggtggaagag 11049659  T
Q  141 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049660 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 11049722  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 10218450 - 10218539
Alignment:
Q  120 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218450 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 10218539  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 300
Target Start/End: Complemental strand, 10610194 - 10610015
Alignment:
Q  121 aaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagac 220  Q
    |||||||||||||||||| ||||||| |||  ||||||| ||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  10610194 aaacatgttgggtggaagtgagccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaaggaatcataccagac 10610095  T
Q  221 aaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgtt 300  Q
    |||| ||| ||||||  |  ||||  | ||||  |||||||  ||||| |||||||||||||||| ||||||||||||||    
T  10610094 aaatagtttacacccataaataaacctctcaaatttttgagacgacatgtttcttgtggaatatccccttctaagttgtt 10610015  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 301
Target Start/End: Complemental strand, 10563510 - 10563331
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||| ||||||| |||||  ||||||||||||   ||||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||    
T  10563510 aacatgttggatggaagatagccagtaaagttattcatgactagtgagagctcaattagtgatgacatattgtaaatacaaggaggaatcataccagaca 10563411  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgtta 301  Q
    | |||||| ||||| |   ||||| ||||||| |||||||| | |||| |||  |||||||||||||| |||| ||||||    
T  10563410 atttgttctcacccaacaataaaagtgtcaagtttttgaggcggcatacttcacgtggaatatctcctcctaatttgtta 10563331  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 10764875 - 10765002
Alignment:
Q  174 caataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttc 273  Q
    ||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||| | ||  ||  ||||| ||||||| |||||||| ||||||||||    
T  10764875 caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttc 10764974  T
Q  274 ttgtggaatatctccttctaagttgtta 301  Q
    |||||||||||||||| |||| ||||||    
T  10764975 ttgtggaatatctcctcctaatttgtta 10765002  T

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Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 11049719 - 11049811
Alignment:
Q  250 caagcttttgaggtgacatatttcttgtggaatatctcc-------ttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagat 335  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  11049719 caagcttttgaggtgacatatttcttgtggaatatctccttctaagttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagat 11049811  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 10718681 - 10718805
Alignment:
Q  179 agtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtg 278  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   | |   || ||||||||||||| |||||||  ||||||||||| |||    
T  10718681 agtgatgagatattgtaaaaacaagaaggaattataccagacaaattgttaggatctgcatataaaattgtcaagtttttgagacgacatatttctggtg 10718780  T
Q  279 gaatatctccttctaagttgttata 303  Q
    ||||| |||| ||||||||||||||    
T  10718781 gaataactccgtctaagttgttata 10718805  T

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Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10218354 - 10218419
Alignment:
Q  16 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttttggaagtggggattgg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10218354 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

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Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 10742439 - 10742606
Alignment:
Q  133 tggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcaca 232  Q
    ||||||||||||||  |||||||||||   |||||  |||||| | ||| |||| |||||||||| ||||||||||| |||||||||||||| ||| |||    
T  10742439 tggaagagagccattgaagttattcatgactagtgaaagctcagtcagtaatgacatattgtaaatacaagaaggaaccataccagacaaatagtttaca 10742538  T
Q  233 ccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgtt 300  Q
    |||  || ||||  | ||||  |||| ||  |||||||||||||||||||||| ||||||||||||||    
T  10742539 cccatatataaacctctcaaattttttagacgacatatttcttgtggaatatccccttctaagttgtt 10742606  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 10748741 - 10748922
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||| ||||| |||||||||||||  ||| |||||    ||||||| ||| | | | |||||||||||||| |||| ||||||||||| |||||||||||    
T  10748741 aacaagttggatggaagagagccaataaatttattttcggttagtgagagttgagttagtgatgagatattataaagacaagaaggaaacataccagaca 10748840  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttata 303  Q
    |||||||| |||||  || |||  || | | | ||||||| | |||||||||||||||||| ||||| | ||||||||||||    
T  10748841 aattgttctcacccacatgtaaccttctaatgtttttgagattacatatttcttgtggaatctctccctttaagttgttata 10748922  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 10549148 - 10549095
Alignment:
Q  250 caagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttata 303  Q
    |||| |||||||  ||||||||||||||||||||||||| || || ||||||||    
T  10549148 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttata 10549095  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 10557261 - 10557224
Alignment:
Q  264 gacatatttcttgtggaatatctccttctaagttgtta 301  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  10557261 gacatatttcttggggaatatctccctctaagttgtta 10557224  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 10594118 - 10594069
Alignment:
Q  245 attgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaa 294  Q
    ||||||||| |||| || ||||||||||||||||||||||| || |||||    
T  10594118 attgtcaagtttttaagatgacatatttcttgtggaatatcaccctctaa 10594069  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 301
Target Start/End: Complemental strand, 12956561 - 12956382
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||||||||| |||||||| || ||||||   |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12956561 aacatgttgggtggaaaagagccatgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12956462  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgtta 301  Q
    |||||||| ||||| ||  ||||| |||||||  ||||  |  |||||||||||||||||||||||| || || ||||||    
T  12956461 aattgttctcacccaaagctaaaaatgtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgtta 12956382  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 12930759 - 12930599
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||||||||| |||||||| || || ||||  |||||  || ||   |||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12930759 aacatgttgggtggaaaagagccatgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12930660  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaat 282  Q
    |||||||| ||| |  |  |||||||||||||  |||||||  ||||||||||||||||||    
T  12930659 aattgttctcactcacacctaaaattgtcaagtgtttgaggaaacatatttcttgtggaat 12930599  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 12897995 - 12897882
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttct 274  Q
    |||||||||||||||||| |||| ||||||||||||| |||| ||||||||||| |||| | ||  ||||  |||||||  |||||||  ||||||||||    
T  12897995 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttct 12897896  T
Q  275 tgtggaatatctcc 288  Q
    ||||||||||||||    
T  12897895 tgtggaatatctcc 12897882  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 12905617 - 12905490
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattg-ttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttc 273  Q
    |||||||||||||||||| |||| ||||||||| ||| |||| ||||||||| ||| ||||| ||  ||||| |||||||  |||||||  |||||||||    
T  12905617 aataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaacatatttc 12905518  T
Q  274 ttgtggaatatctccttctaagttgtta 301  Q
    ||||||||||||||| || || ||||||    
T  12905517 ttgtggaatatctccctcaaaattgtta 12905490  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 12947124 - 12946958
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    ||||||||||||| || |||||||| || || ||||| |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12947124 aacatgttgggtgcaaaagagccatgaaggtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12947025  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctcc 288  Q
    |||||||| ||  | ||  ||||| |||||||  ||||||   |||||||||||||||||| |||||    
T  12947024 aattgttctcattcaaagctaaaaatgtcaagtgtttgagaaaacatatttcttgtggaatgtctcc 12946958  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 17925185 - 17925311
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttct 274  Q
    ||||||||||||||| || |||| |||||| |||||| |||| || ||||||||| ||||| ||  ||||| |||||||  |||| ||  ||||||||||    
T  17925185 aataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatatttct 17925284  T
Q  275 tgtggaatatctccttctaagttgtta 301  Q
    |||||||||||||| || || ||||||    
T  17925285 tgtggaatatctccctcaaaattgtta 17925311  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  56 gcatttgttttggaagtggggattggacctgagaattgatttcccccaat 105  Q
    ||||||| | ||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

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