View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_51 (Length: 337)
Name: NF5400_low_51
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 38508707 - 38508386
Alignment:
| Q |
1 |
acaaaatcaaaatcaaaaggagatgttgccaattgcatgtggaaagataaatgcacttgggaatttgtttgactaatatgtgacgaggtattataagtgt |
100 |
Q |
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| T |
38508707 |
acaaaatcaaaatcaaaaggagatgttgccaattgcatgtggaaagataaatgcacttgggaatttgtttgactaatatgtgacgaggtattataagtgt |
38508608 |
T |
|
| Q |
101 |
ttgccatgatctagtgagatttgacctttatcactttgatttgatttgtnnnnnnnnnnnnnnnnnnggatgactcttttctattacattttgattaggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
38508607 |
ttgccatgatctagtgagatttgacctttatcactttgatttgatttgtaaaaaaaaaaaaaaaaaaggatgacttttttctattacattttgattaggc |
38508508 |
T |
|
| Q |
201 |
tgttggtttgttaatttttcactttagtttttggtgcatgcactttatatgtaagtgggatatgaattatgattttatgaaaggtaagatgatagagtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38508507 |
tgttggtttgttaatttttcactttagtttttggtgcatgcactttatatgtaagtgggatatgaattatgattttatgaaaggtaagatgatagagtgc |
38508408 |
T |
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| Q |
301 |
attcatcaaaaagtgaagtttg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38508407 |
attcatcaaaaagtgaagtttg |
38508386 |
T |
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