View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_53 (Length: 336)
Name: NF5400_low_53
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_53 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 7000308 - 7000629
Alignment:
| Q |
15 |
actcacaaaaatatttccatggacaattaactaccttttactggt-tatggtagttaactgcggttactaaactccaacattccagaccagaaataacaa |
113 |
Q |
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| T |
7000308 |
actcacaaaaatatctccatggacaattaactaccgtttactggtctatggtagttaacttcggttactaaactccaacattccagaccagaaataacaa |
7000407 |
T |
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| Q |
114 |
ctcccctttgatgaaaaatac------------cattttccttccaaacttcaacaaatcaaccttcatcaaatttctttaaattcaagcaactgtgagg |
201 |
Q |
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| T |
7000408 |
ttcccctttgatgaaaaacacataaacacaaaccattctccttccaaacttcaacaaatcaaccttcatcaaatttctttaaattcaagcaactatgaga |
7000507 |
T |
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| Q |
202 |
aaagtcagttaactgcaactggggctcagtgaataccaattaactacagtggatcagcgagtggtagttaactatcgctgaagatttttccgtcaattta |
301 |
Q |
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| T |
7000508 |
aaagtcagttaactgccattggggctcagcgaataccagttaactacaatggatcagtgagtggtagttaactatcgttgaagatttttccatcaattta |
7000607 |
T |
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| Q |
302 |
ggatgcgtgagagcaaatagtg |
323 |
Q |
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| T |
7000608 |
ggatgcgtgagagcaaatagtg |
7000629 |
T |
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Target: scaffold0318 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 4645 - 4594
Alignment:
| Q |
144 |
tccaaacttcaacaaatcaaccttcatcaaatttctttaaattcaagcaact |
195 |
Q |
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| T |
4645 |
tccaaactccaacaaatcaacctccatcaaatttcttcaaagttaagcaact |
4594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 12137482 - 12137535
Alignment:
| Q |
142 |
cttccaaacttcaacaaatcaaccttcatcaaatttctttaaattcaagcaact |
195 |
Q |
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| T |
12137482 |
cttccaaacttcgacaaattaatcttgatcaaatttcttcaaagtcaagcaact |
12137535 |
T |
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