View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_56 (Length: 325)

Name: NF5400_low_56
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_56
NF5400_low_56
[»] chr5 (1 HSPs)
chr5 (13-308)||(11364542-11364837)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 11364837 - 11364542
Alignment:
Q  13 aaaatctttatagttctggaaaatctgcaaaccatgcaaacaacattatatggatttctaaactcccaatataggaacgcaacaaatataatcacaagac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11364837 aaaatctttatagttctggaaaatctgcaaaccatgcaaacaacattatatggatttctaaactcccaatataggaacgcaacaaatataatcacaagac 11364738  T
Q  113 tggtgaaaattagcaagagaaaacattttctgaatgctcttgagtgagttaacacccatcagaacatttgatttatacttgtnnnnnnnnncgtttgatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  11364737 tggtgaaaattagcaagagaaaacattttctgaatgctcttgagtgagttaacacccatcagaacatttgatttatacttgtaaaaaaaaacgtttgatt 11364638  T
Q  213 tatacacataaagattacatggaatcatggataatagatgtcaaatgcaatttacaagatgagaaattaagctatacctattcccttagatgcatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11364637 tatacacataaagattacatggaatcatggataatagatgtcaaatgcaatttacaagatgagaaattaagctatacctattcccttagatgcatg 11364542  T

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