View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_57 (Length: 319)
Name: NF5400_low_57
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 30664100 - 30663803
Alignment:
| Q |
8 |
attatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30664100 |
attatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaa |
30664001 |
T |
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| Q |
108 |
tttgatgatacnnnnnnngtctccaactatgtttcagtttcgacaacatcatagacattttatataactacacttacaatggcactcaatatttacctaa |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30664000 |
tttgatgatactttttttgtctccaactatgtttcagtttcgacaacatcatagacattttatataactacacttacaatggcactcaatatttacctaa |
30663901 |
T |
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| Q |
208 |
aaaatatctgtgtggatctcacaatccttctttccgttgttacggcaatgatatgtttgcagaaaattcaggtctgaagagatgtgagaaagatattga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | || |||||||||||||||||||||||||||||| |
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| T |
30663900 |
aaaatatctgtgtggatctcacaatccttctttccgttgttacggcaatgatatg-ttacggcaatgataggtctgaagagatgtgagaaagatattga |
30663803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 15523290 - 15523181
Alignment:
| Q |
9 |
ttatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
108 |
Q |
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|||| |||||||||||||| |||||| | ||||||| | | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
15523290 |
ttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcctaaat |
15523191 |
T |
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| Q |
109 |
ttgatgatac |
118 |
Q |
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|| ||||||| |
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| T |
15523190 |
ttaatgatac |
15523181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 31012531 - 31012640
Alignment:
| Q |
9 |
ttatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
108 |
Q |
| |
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|||||||||||||| |||| |||||| | || |||| | ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31012531 |
ttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
31012630 |
T |
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| Q |
109 |
ttgatgatac |
118 |
Q |
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| T |
31012631 |
ataatgatac |
31012640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 15493355 - 15493419
Alignment:
| Q |
54 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatac |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
15493355 |
cacattatcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatac |
15493419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 31001984 - 31002085
Alignment:
| Q |
14 |
ctcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgat |
113 |
Q |
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|||||||||||||| |||||| |||| ||||||| |||||||| ||| ||||| |||||||||||||| ||||||||||||||||||| | |||| | |
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| T |
31001984 |
ctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctttgttctcctaagtttgtt |
31002080 |
T |
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| Q |
114 |
gatac |
118 |
Q |
| |
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||||| |
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|
| T |
31002081 |
gatac |
31002085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 30958768 - 30958822
Alignment:
| Q |
54 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
108 |
Q |
| |
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|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30958768 |
cacaccatgaaactaaaaagaacagaccttgatcaaaatctttgttctcctcaat |
30958822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 31221942 - 31222000
Alignment:
| Q |
179 |
acttacaatggcactcaatatttacctaaaaaatatctgtgtggatctcacaatccttc |
237 |
Q |
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|||||||||| | ||||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
31221942 |
acttacaatgtctctcaagatttacttaaaaaatctctgtgtggatctcacaatccttc |
31222000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 31221771 - 31221864
Alignment:
| Q |
15 |
tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
108 |
Q |
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||||||||||||| |||||| | || ||| || || ||||| ||||||||| || |||||||||||| |||||| ||||||||||||||| |
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| T |
31221771 |
tcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttttgttctcctcaat |
31221864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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