View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_63 (Length: 293)
Name: NF5400_low_63
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7761223 - 7761500
Alignment:
| Q |
1 |
taaattaggccgatattgatatagctataaaacccctaatctttaatttatgcaatcaagaatgaaacccaatctgaaaataattagtcaaataaaagta |
100 |
Q |
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| T |
7761223 |
taaattaggccgatattgatatagctataaaacccctaatctttaatttatgcaatcaagaatgaaacccaatctgaaaataattagtcaaataaaagta |
7761322 |
T |
|
| Q |
101 |
aaactatgtatatctgcaactgatttatgccaattatctatttgctattgaaggcttcagcttccaaataatcctgcaaatagaagtaaaatgtataaaa |
200 |
Q |
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| T |
7761323 |
aaactatgtatatctgcaactgatttatgccaattatctatttgctattgaaggcttcagcttccaaataatcctgcaaatagaagtaaaatgtataaaa |
7761422 |
T |
|
| Q |
201 |
tcaaatgatataatgaatattccttagtttagctttggtttgctgttctccgactc----catgattcatgtcctgat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7761423 |
tcaaatgatataatgaatattccttagtttagctttggtttgctgttctccgactccatgcatgattcatgtcctgat |
7761500 |
T |
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