View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_65 (Length: 289)

Name: NF5400_low_65
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_65
NF5400_low_65
[»] chr5 (5 HSPs)
chr5 (14-270)||(41885833-41886089)
chr5 (111-266)||(38605752-38605907)
chr5 (111-235)||(40181271-40181395)
chr5 (111-190)||(40180556-40180635)
chr5 (111-190)||(38605061-38605140)
[»] chr8 (5 HSPs)
chr8 (112-252)||(44459510-44459650)
chr8 (112-252)||(44467043-44467183)
chr8 (120-177)||(44460287-44460344)
chr8 (120-177)||(44467820-44467877)
chr8 (121-180)||(34502333-34502392)
[»] chr1 (1 HSPs)
chr1 (120-177)||(46359157-46359214)
[»] chr6 (2 HSPs)
chr6 (121-180)||(410918-410977)
chr6 (114-181)||(9161362-9161429)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 41886089 - 41885833
Alignment:
Q  14 catcatcatcagcatcccaattctcaaggaagcagtaacatcatcttttaacagatagaagcggtttggtggatcatatcatcactacaccttgtactgt 113  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41886089 catcatcagcagcatcccaattcccaaggaagtagtaacatcatcttttaacagatagaagcagtttggtggatcatatcatcactactccttgtactgt 41885990  T
Q  114 aaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaagaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  41885989 aaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgtgtgcagctttcccttctcgccccataattgagaagaat 41885890  T
Q  214 tctattagtttatttagaatccgagcgttaagaaggccggtctgataatggcctgta 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41885889 tctattagtttatttagaatccgagcgttaagaaggccggtctgataatggcctgta 41885833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 38605752 - 38605907
Alignment:
Q  111 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaag 210  Q
    ||||||||||||||| |||||||||||| ||||||||||  |||||||  |||||||||| || ||||||| ||| |||||||| || ||||||||||||    
T  38605752 tgtaaagtaatatgtgtcttgatttggcacacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgccttctcgacctataattgagaag 38605851  T
Q  211 aattctattagtttatttagaatccgagcgttaagaaggccggtctgataatggcc 266  Q
    |||| ||| || | ||| |||||  | | ||||||||||||||| |||||||||||    
T  38605852 aattgtatgaggtgattgagaatgggtgggttaagaaggccggtttgataatggcc 38605907  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 40181271 - 40181395
Alignment:
Q  111 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaag 210  Q
    |||| ||||||||||||||||||||||| ||||||||||  | ||||| |||||||||||||| ||||| ||||| ||||   ||||||||| |||||||    
T  40181271 tgtatagtaatatgtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataactgagaag 40181370  T
Q  211 aattctattagtttatttagaatcc 235  Q
     ||||||| |||||||| |||||||    
T  40181371 gattctatgagtttattgagaatcc 40181395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 40180556 - 40180635
Alignment:
Q  111 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttccctt 190  Q
    |||||||  ||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  40180556 tgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 40180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 38605061 - 38605140
Alignment:
Q  111 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttccctt 190  Q
    |||||||  ||||| ||||||||| ||| |||| |||||  ||||||||||||||||||| | |||||||| ||| ||||    
T  38605061 tgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 38605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 44459650 - 44459510
Alignment:
Q  112 gtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaaga 211  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||||  |||||||||| || |||||||  || ||||||||||||||||||||||||     
T  44459650 gtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcgccccataattgagaagg 44459551  T
Q  212 attctattagtttatttagaatccgagcgttaagaaggccg 252  Q
    ||| ||| |||  ||| ||||| || || ||||||| ||||    
T  44459550 attgtatgagtgaattgagaatacgggcattaagaacgccg 44459510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 44467183 - 44467043
Alignment:
Q  112 gtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcagccttcccttctcgccccataattgagaaga 211  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||||  |||||||||| || |||||||  || ||||||||||||||||||||||||     
T  44467183 gtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcgccccataattgagaagg 44467084  T
Q  212 attctattagtttatttagaatccgagcgttaagaaggccg 252  Q
    ||| ||| |||  ||| ||||| || || ||||||| ||||    
T  44467083 attgtatgagtgaattgagaatacgggcattaagaacgccg 44467043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 44460344 - 44460287
Alignment:
Q  120 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 177  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  44460344 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 44460287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 44467877 - 44467820
Alignment:
Q  120 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 177  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  44467877 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 44467820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 34502333 - 34502392
Alignment:
Q  121 tatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgca 180  Q
    ||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||| |||||    
T  34502333 tatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgca 34502392  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 46359214 - 46359157
Alignment:
Q  120 atatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagt 177  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||    
T  46359214 atatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagt 46359157  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 410977 - 410918
Alignment:
Q  121 tatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgca 180  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||||| || ||||||    
T  410977 tatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttcaagtgca 410918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 9161429 - 9161362
Alignment:
Q  114 aaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgagtgcag 181  Q
    |||||||||||| |||||||| ||  ||||||||||  ||||||||| ||||||||| || |||||||    
T  9161429 aaagtaatatgtctcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcag 9161362  T

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