View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_66 (Length: 285)

Name: NF5400_low_66
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_66
NF5400_low_66
[»] chr3 (2 HSPs)
chr3 (110-224)||(15796568-15796682)
chr3 (110-224)||(4324452-4324566)
[»] chr1 (3 HSPs)
chr1 (109-224)||(32645503-32645618)
chr1 (107-220)||(24607615-24607730)
chr1 (149-201)||(51811221-51811273)
[»] chr8 (3 HSPs)
chr8 (110-224)||(31104101-31104215)
chr8 (107-224)||(43603725-43603842)
chr8 (158-195)||(28133715-28133752)
[»] chr4 (6 HSPs)
chr4 (110-224)||(440242-440356)
chr4 (107-224)||(4655948-4656065)
chr4 (108-224)||(3504514-3504630)
chr4 (155-225)||(12200475-12200545)
chr4 (52-106)||(11103473-11103527)
chr4 (18-46)||(11102036-11102064)
[»] chr5 (2 HSPs)
chr5 (107-224)||(23357025-23357142)
chr5 (107-224)||(32891543-32891659)
[»] chr7 (1 HSPs)
chr7 (108-224)||(23680408-23680524)
[»] chr6 (1 HSPs)
chr6 (107-224)||(2025770-2025888)
[»] chr2 (1 HSPs)
chr2 (138-203)||(39238019-39238084)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 15796682 - 15796568
Alignment:
Q  110 atgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtagc 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15796682 atgtgtttggaataccggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgatattgggtagc 15796583  T
Q  210 gtgcaccgtgaaaaa 224  Q
    |||||||||||||||    
T  15796582 gtgcaccgtgaaaaa 15796568  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 4324452 - 4324566
Alignment:
Q  110 atgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtagc 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  4324452 atgtgtttggaataccggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacagtaaaagtgatattgggtagc 4324551  T
Q  210 gtgcaccgtgaaaaa 224  Q
    |||||||||||||||    
T  4324552 gtgcaccgtgaaaaa 4324566  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 32645618 - 32645503
Alignment:
Q  109 tatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtag 208  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  32645618 tatgtgtttggaataccggtggaaagctcaaaaaagcacgtctaggcaaaagttggaatttccagcttcataaaatcacggtaaaagtgacattggatag 32645519  T
Q  209 cgtgcaccgtgaaaaa 224  Q
    ||||||||||||||||    
T  32645518 cgtgcaccgtgaaaaa 32645503  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 24607730 - 24607615
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaa--gcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgg 204  Q
    |||||||||||||||||| |||| |||||  ||||||  |||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  24607730 agtatgtgtttggaataccggtgcaaagccaaaaaaaacgcacgtctaggcaaaagctggaattttcagcttcataaagtcacggtaaaagtaacattgg 24607631  T
Q  205 gtagcgtgcaccgtga 220  Q
    | |||||| |||||||    
T  24607630 gaagcgtgaaccgtga 24607615  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 51811273 - 51811221
Alignment:
Q  149 tctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacat 201  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  51811273 tctaggaaaaagccggaatttctagcttcataaagtcacggtaaaagtgacat 51811221  T

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Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 31104101 - 31104215
Alignment:
Q  110 atgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtagc 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  31104101 atgtgtttggaataccggtggaaagctcaaaaaagcacttctaagcaaaagctggaatttccagcttcataaaatcacagtaaaagtgatattgggtagc 31104200  T
Q  210 gtgcaccgtgaaaaa 224  Q
    |||||||||||||||    
T  31104201 gtgcaccgtgaaaaa 31104215  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 43603842 - 43603725
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggt 206  Q
    |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  43603842 agtatgtgtttgaaataccggtggaaagctcaaaaaagcacttttaggcaaaagctggaatttccagcttcataaaatcacgctaaaagtgacattggat 43603743  T
Q  207 agcgtgcaccgtgaaaaa 224  Q
    |||||||| |||||||||    
T  43603742 agcgtgcatcgtgaaaaa 43603725  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 28133752 - 28133715
Alignment:
Q  158 aagctggaatttccagcttcataaaatcacggtaaaag 195  Q
    ||||| || |||||||||||||||||||||||||||||    
T  28133752 aagctagagtttccagcttcataaaatcacggtaaaag 28133715  T

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Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 440356 - 440242
Alignment:
Q  110 atgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtagc 209  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  440356 atgtgtttggaataccggtggaaagctcaaaaaagcacttttaggcaaaagctggaatttccagcttcataaaatcacagtaaaagtgatattgggtagc 440257  T
Q  210 gtgcaccgtgaaaaa 224  Q
    |||||||||||||||    
T  440256 gtgcaccgtgaaaaa 440242  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 4655948 - 4656065
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggt 206  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||  ||    
T  4655948 agtatgtgtttggaataccggtggaaagctcaaaaaagcacttttaggcaaaatctggaattttcagcttcataaaatcactgtaaaagtgacattatgt 4656047  T
Q  207 agcgtgcaccgtgaaaaa 224  Q
    ||||||||||||||||||    
T  4656048 agcgtgcaccgtgaaaaa 4656065  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 3504630 - 3504514
Alignment:
Q  108 gtatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggta 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||  |||||||||||||||||||    
T  3504630 gtatgtgtttggaataccggtggaaagctcaaaaaagcacttctaggcaaaagctgagattttcagcttcataaaatcatagtaaaagtgacattgggta 3504531  T
Q  208 gcgtgcaccgtgaaaaa 224  Q
    ||||||||||| |||||    
T  3504530 gcgtgcaccgtaaaaaa 3504514  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 12200475 - 12200545
Alignment:
Q  155 caaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggtagcgtgcaccgtgaaaaat 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||  | ||| |||||| ||||||    
T  12200475 caaaagctggaatttccagcttcataaagtcacggtaaaagtgacattggaaaacgtacaccgtaaaaaat 12200545  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 11103473 - 11103527
Alignment:
Q  52 taagactaaaaacttaaccattgccctatcacagtgataaatagttaaaccactc 106  Q
    |||||||||||||  ||||||| ||||||||||||||||||| | ||||||||||    
T  11103473 taagactaaaaaccgaaccatttccctatcacagtgataaatggctaaaccactc 11103527  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 11102036 - 11102064
Alignment:
Q  18 attactatcaaggaaatactttcatacaa 46  Q
    |||||||||||||||||||||||||||||    
T  11102036 attactatcaaggaaatactttcatacaa 11102064  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 23357142 - 23357025
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggt 206  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||| |||||||    
T  23357142 agtatgtgtttggaataccggtggaaagctcaaaaaagcacttttaggcaaaagctggaattttcagcttcataaaatcatagtaaaagtgatattgggt 23357043  T
Q  207 agcgtgcaccgtgaaaaa 224  Q
    ||||||||||||||||||    
T  23357042 agcgtgcaccgtgaaaaa 23357025  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 32891659 - 32891543
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaagc-acttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattggg 205  Q
    |||||||||||||||||| |||| |||||| |||||| | || | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||     
T  32891659 agtatgtgtttggaataccggtgcaaagctaaaaaaacccacgtttaggcaaaagctggaatttccagcttcataaaatcacggtaaaa--gacattgga 32891562  T
Q  206 tagcgtgcaccgtgaaaaa 224  Q
     | ||||||||||||||||    
T  32891561 aaacgtgcaccgtgaaaaa 32891543  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 23680408 - 23680524
Alignment:
Q  108 gtatgtgtttggaatacgggtggaaagctcaaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattgggta 207  Q
    ||||||||||||||||| ||||||||| ||||||||| || |||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  23680408 gtatgtgtttggaatactggtggaaagttcaaaaaagtacgtctaggtaaaagttagaatttccagcttcataaaatcacgataaaagtgacattgggta 23680507  T
Q  208 gcgtgcaccgtgaaaaa 224  Q
    ||||||||||| |||||    
T  23680508 gcgtgcaccgtaaaaaa 23680524  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 2025888 - 2025770
Alignment:
Q  107 agtatgtgtttggaatacgggtggaaagctcaaaaaag-cacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattggg 205  Q
    |||||||||||||||||| ||||||||||||||||||  ||| |||| |||||||| ||||||||||||||||||||||||| |||||||||| |||| |    
T  2025888 agtatgtgtttggaataccggtggaaagctcaaaaaaaacacgtctaagcaaaagcaggaatttccagcttcataaaatcacagtaaaagtgatattgag 2025789  T
Q  206 tagcgtgcaccgtgaaaaa 224  Q
    || ||||||||||||||||    
T  2025788 taacgtgcaccgtgaaaaa 2025770  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 39238084 - 39238019
Alignment:
Q  138 aaaaaagcacttctaggcaaaagctggaatttccagcttcataaaatcacggtaaaagtgacattg 203  Q
    ||||| |||| |||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||    
T  39238084 aaaaatgcacgtctaggcaaaagctggtattttcagcttcataaagtcacggtaaaagtcacattg 39238019  T

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