View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_low_67 (Length: 285)
Name: NF5400_low_67
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_67 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 38486544 - 38486289
Alignment:
| Q |
15 |
aaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaaga |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486544 |
aaccaagcaagagaagaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaaga |
38486445 |
T |
|
| Q |
115 |
gatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486444 |
gatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgatt |
38486345 |
T |
|
| Q |
215 |
ttccggctttccttctccaagtttcaagggacctggcaattttacacggtatattt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486344 |
ttccggctttccttctccaagtttcaagggacctggcaattttacacggtatattt |
38486289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 3685655 - 3685536
Alignment:
| Q |
135 |
tcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaa |
234 |
Q |
| |
|
|||||||| || ||||| || |||||||| || || ||||||||||| || || || || || || || || || ||||||||||| || |||||||||| |
|
|
| T |
3685655 |
tcctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgcatgattctgattttccggtttcccttctccaa |
3685556 |
T |
|
| Q |
235 |
gtttcaagggacctggcaat |
254 |
Q |
| |
|
|||| || ||||| |||||| |
|
|
| T |
3685555 |
gttttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
151 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
235 |
Q |
| |
|
|||||||||||||||| ||||| | || || || |||||| |||| || || | |||||||||||| ||||| ||||||||||| |
|
|
| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 30120951 - 30120706
Alignment:
| Q |
7 |
ctgatatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattc |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| ||| | || || || || |||||||| || || ||||| |||||||| || | ||| |||||| | | | || |
|
|
| T |
30120951 |
ctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgacacctaaaattgttggtttccggacaccgtagtaacgtctatactc |
30120852 |
T |
|
| Q |
107 |
ttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtgg |
206 |
Q |
| |
|
||| | |||||||| | || ||||| |||||||||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||||||||| |
|
|
| T |
30120851 |
ttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtga |
30120752 |
T |
|
| Q |
207 |
ttttgattttccggctttccttctccaagtttcaagggacctggca |
252 |
Q |
| |
|
|||||||| || |||||||| || || || ||||| ||||| |||| |
|
|
| T |
30120751 |
ttttgattctcgggctttccctccccgagcttcaatggacccggca |
30120706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
151 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
235 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
|
|
| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University