View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_low_72 (Length: 271)

Name: NF5400_low_72
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_low_72
NF5400_low_72
[»] chr1 (23 HSPs)
chr1 (49-252)||(11880321-11880524)
chr1 (49-252)||(11902821-11903024)
chr1 (49-218)||(11880129-11880298)
chr1 (49-218)||(11902629-11902798)
chr1 (49-202)||(11902725-11902878)
chr1 (49-202)||(11880225-11880378)
chr1 (92-248)||(11889820-11889976)
chr1 (49-161)||(11879889-11880001)
chr1 (92-218)||(11880076-11880202)
chr1 (92-203)||(11879836-11879947)
chr1 (92-218)||(11902576-11902702)
chr1 (100-215)||(52820894-52821009)
chr1 (49-107)||(11889873-11889931)
chr1 (92-161)||(11879980-11880049)
chr1 (92-161)||(11879788-11879857)
chr1 (92-158)||(11889580-11889646)
chr1 (92-158)||(11889628-11889694)
chr1 (97-164)||(52821137-52821204)
chr1 (92-218)||(11889484-11889610)
chr1 (92-218)||(11902480-11902606)
chr1 (188-218)||(52821419-52821449)
chr1 (92-161)||(11879671-11879740)
chr1 (100-164)||(52820993-52821057)
[»] scaffold1918 (1 HSPs)
scaffold1918 (92-161)||(1-70)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 11880321 - 11880524
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    ||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  11880321 tactactacaaatcccctcctcatccatctcccattccccatacaccttactattacacatctcccccaccaccttcaccgtctcctccaccaccatatt 11880420  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11880421 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaa 11880520  T
Q  249 ttct 252  Q
    ||||    
T  11880521 ttct 11880524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 11902821 - 11903024
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    ||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  11902821 tactactacaaatcccctcctcatccatctcccattccccatacaccttactattacacatctcccccaccaccttcaccgtctcctccaccaccatatt 11902920  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902921 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaa 11903020  T
Q  249 ttct 252  Q
    ||||    
T  11903021 ttct 11903024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 11880129 - 11880298
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |    
T  11880129 tactactacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatact 11880228  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccacc 218  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||||||| ||||| || || ||||||||    
T  11880229 actacaaatctcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccacc 11880298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 11902629 - 11902798
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |    
T  11902629 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatact 11902728  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccaccacc 218  Q
    | |||||||||||||| ||||| |||||||||||||  ||||||||||| ||||| || || ||||||||    
T  11902729 attacaaatctcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccacc 11902798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 11902725 - 11902878
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |    
T  11902725 tactattacaaatctcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatact 11902824  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactaca 202  Q
    |||||||||| ||||| | ||| ||||| |||||||| ||||||||||| ||||    
T  11902825 actacaaatcccctcctcatccatctcccattccccatacaccttactattaca 11902878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 11880225 - 11880378
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |    
T  11880225 tactactacaaatctcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatact 11880324  T
Q  149 actacaaatctcctccccctccgtctcctattccccacacaccttactactaca 202  Q
    |||||||||| ||||| | ||| ||||| |||||||| ||||||||||| ||||    
T  11880325 actacaaatcccctcctcatccatctcccattccccatacaccttactattaca 11880378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 11889820 - 11889976
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||| ||||||||||| || || || ||||||||||||||| | || |||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||    
T  11889820 caccatactattacaagtccccaccaccaccttcaccgtctccacccccaccatactactacaaatcacctcctcctccatcacctattccccatacacc 11889919  T
Q  192 ttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaa 248  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  11889920 ttactactacaagtccccaccaccacctaaggttcttccaccaccatactattacaa 11889976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 11879889 - 11880001
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatatt 148  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||||| ||| ||||||||||||| |    
T  11879889 tactactacaaatctcctcctcctccatctcctattcccaaaacaccttactactacaaatctcccccacccccttcaccatctcctccaccaccatact 11879988  T
Q  149 actacaaatctcc 161  Q
    |||||||||||||    
T  11879989 actacaaatctcc 11880001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 11880076 - 11880202
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||    
T  11880076 caccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccatacacc 11880175  T
Q  192 ttactactacaagtccccaccaccacc 218  Q
    |||||| ||||| || || ||||||||    
T  11880176 ttactattacaaatctcccccaccacc 11880202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 11879836 - 11879947
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||| ||||| |||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||| | |||||    
T  11879836 caccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactacaaatctcctcctcctccatctcctattcccaaaacacc 11879935  T
Q  192 ttactactacaa 203  Q
    ||||||||||||    
T  11879936 ttactactacaa 11879947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 11902576 - 11902702
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||    
T  11902576 caccttactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccatacacc 11902675  T
Q  192 ttactactacaagtccccaccaccacc 218  Q
    |||||| ||||| || || ||||||||    
T  11902676 ttactattacaaatctcccccaccacc 11902702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 52821009 - 52820894
Alignment:
Q  100 tattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacaccttactact 199  Q
    ||||| |||||||| || ||||||||||| ||| |||||||||| ||||| ||||| |||||||| ||||| |||||  | || ||  ||||||||||||    
T  52821009 tattataaatctcctccaccaccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactact 52820910  T
Q  200 acaagtccccaccacc 215  Q
    |||| || ||||||||    
T  52820909 acaattcaccaccacc 52820894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 11889873 - 11889931
Alignment:
Q  49 tactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaa 107  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  11889873 tactactacaaatcacctcctcctccatcacctattccccatacaccttactactacaa 11889931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 11879980 - 11880049
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcc 161  Q
    |||| ||||| |||||||||||||| || |||||||||||| ||||||||||||| ||||| ||||||||    
T  11879980 caccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactataaatctcc 11880049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 11879788 - 11879857
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcc 161  Q
    |||| ||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||||||||||||    
T  11879788 caccatactattacaagtccccaccaccaccttcaccatctcctccaccaccatactactacaaatctcc 11879857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 11889580 - 11889646
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatc 158  Q
    ||||||||||||||||||| || |||||||||||||| ||| | |||||||| || ||||| |||||    
T  11889580 caccttactattacaaatccccaccgccaccttcaccatctcccccaccaccctactactataaatc 11889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 11889628 - 11889694
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatc 158  Q
    |||| ||||| || ||||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  11889628 caccctactactataaatcacccccaccaccttcaccatctcctccaccaccatactactacaaatc 11889694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 52821204 - 52821137
Alignment:
Q  97 tactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctcc 164  Q
    ||||||||||| |||||||| |||||||| || ||  |||||||||| || |||||||| ||||||||    
T  52821204 tactattacaagtctccccctccaccttctccctcacctccaccaccttactactacaagtctcctcc 52821137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 11889484 - 11889610
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||| ||||| |||||||| || || ||||| || || ||| ||||||||||||| ||||||||||| || || || || || |||  ||| | | ||||    
T  11889484 caccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctcccccacc 11889583  T
Q  192 ttactactacaagtccccaccaccacc 218  Q
    |||||| ||||| |||||||| |||||    
T  11889584 ttactattacaaatccccaccgccacc 11889610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 11902480 - 11902606
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacacc 191  Q
    |||| ||||||||||| || || || || |||||||| ||| ||||||||||||| ||||| |||||||| || || || || ||   ||| | | ||||    
T  11902480 caccatactattacaagtccccaccacccccttcaccatctcctccaccaccatactactataaatctcccccaccaccctcaccctctccacccccacc 11902579  T
Q  192 ttactactacaagtccccaccaccacc 218  Q
    |||||| |||||||| || ||||||||    
T  11902580 ttactattacaagtctcctccaccacc 11902606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 52821449 - 52821419
Alignment:
Q  188 caccttactactacaagtccccaccaccacc 218  Q
    |||||||||||||||||||||||||||||||    
T  52821449 caccttactactacaagtccccaccaccacc 52821419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 11879671 - 11879740
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcc 161  Q
    |||| ||||||||||| ||||| || ||||| || || ||  |||||||||||||||||||||| |||||    
T  11879671 caccatactattacaagtctcctccaccaccatctccctcacctccaccaccatattactacaagtctcc 11879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 52821057 - 52820993
Alignment:
Q  100 tattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcctcc 164  Q
    |||||||| || || || || |||||||||||  |||||||||||||||| || |||||||||||    
T  52821057 tattacaagtccccaccacctccttcaccgtcccctccaccaccatattattataaatctcctcc 52820993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 70 - 1
Alignment:
Q  92 caccttactattacaaatctcccccgccaccttcaccgtctgctccaccaccatattactacaaatctcc 161  Q
    |||||||||||||||||||||| || ||||| || || ||  ||||||| ||||| |||||||| |||||    
T  70 caccttactattacaaatctccaccaccaccatctccctcacctccacctccatactactacaagtctcc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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