View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_73 (Length: 271)
Name: NF5400_low_73
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 3550988 - 3550730
Alignment:
| Q |
10 |
caatgaaataacatgaattcataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgct |
109 |
Q |
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| T |
3550988 |
caatgaaataacatgaattcgtaaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgct |
3550889 |
T |
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| Q |
110 |
tcaaaccttttggattttgtgtattcatctttttatgtacnnnnnnngaaagaatagatgatgaa--------gaataattcttctttctcttctctccc |
201 |
Q |
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| T |
3550888 |
tcaaaccttttggattttgtgtattcatctttttatgtacaaaaaaagaaagaatagatgatgaagaataaatgaataattcttctttctcttctctccc |
3550789 |
T |
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| Q |
202 |
tcttttgaagctatatagaatttcttcg-ttttttagcttaataatcaatggcgtgatg |
259 |
Q |
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| T |
3550788 |
tcttttgaagctatatagaatttctttgtttttttatcttaataatcaatggcgtgatg |
3550730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 3560035 - 3559945
Alignment:
| Q |
23 |
tgaattcataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgcttcaa |
113 |
Q |
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| T |
3560035 |
tgaattcataaaaataatcacattttgtagctccatgactacaacatatccctcttacaaggagggcatcataaatggcaaaatgcttcaa |
3559945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 3574063 - 3574007
Alignment:
| Q |
9 |
gcaatgaaataacatgaattcataaaatgaatcacattttgtagcttccagactaca |
65 |
Q |
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| T |
3574063 |
gcaatggaataacgtgaattcataaaaagaatcacattttgtagcttcccgactaca |
3574007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 3558698 - 3558791
Alignment:
| Q |
56 |
ccagactacaacaaacccctcttacaaggaggacaccat-agatgacaaaatgcttcaaaccttttggattttgtgtattcatctttttatgtac |
149 |
Q |
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| T |
3558698 |
ccagactacaacaaaccctt-ttacaaggtggacatcatgaaatgacaaaatgcttcaaacccttttgattatttatattaatctttttatgtac |
3558791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 3567875 - 3567933
Alignment:
| Q |
30 |
ataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggagga |
88 |
Q |
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| T |
3567875 |
ataaaaagaatcacattttgtagcagccagactacaacaaaaccctcttacaagaagga |
3567933 |
T |
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