View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_74 (Length: 266)
Name: NF5400_low_74
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 20439881 - 20440121
Alignment:
| Q |
18 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaattgtgtgattgttgttgagttcttgaaggtttgt |
117 |
Q |
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| T |
20439881 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaaatgtgtgattgttgttgagttcttgaaggtttgt |
20439980 |
T |
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| Q |
118 |
atcaaagtttgtgttggtgatgttagaacatgattctgg---aaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgaggaaga |
214 |
Q |
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| T |
20439981 |
atcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgagggaga |
20440080 |
T |
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| Q |
215 |
aaaaatggttgaaacaacatcaattggggttgaagatgatg |
255 |
Q |
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| T |
20440081 |
aaaaatggttgaaacaacatcagtttgggttcaagatgatg |
20440121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 20445486 - 20445726
Alignment:
| Q |
18 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaattgtgtgattgttgttgagttcttgaaggtttgt |
117 |
Q |
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| T |
20445486 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaaatgtgtgattgttgttgagttcttgaaggtttgt |
20445585 |
T |
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| Q |
118 |
atcaaagtttgtgttggtgatgttagaacatgattctgg---aaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgaggaaga |
214 |
Q |
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| T |
20445586 |
atcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgagggaga |
20445685 |
T |
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| Q |
215 |
aaaaatggttgaaacaacatcaattggggttgaagatgatg |
255 |
Q |
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| T |
20445686 |
aaaaatggttgaaacaacatcagtttgggttcaagatgatg |
20445726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 35780406 - 35780166
Alignment:
| Q |
18 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaattgtgtgattgttgttgagttcttgaaggtttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
35780406 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcgaaaatgtgtgattgttgttgagttcttgaaggtttgt |
35780307 |
T |
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| Q |
118 |
atcaaagtttgtgttggtgatgttagaacatgattctggaa---aaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgaggaaga |
214 |
Q |
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| T |
35780306 |
atcagagtttgtgttggtgatgttagaacatgattctggaaaaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgagggaga |
35780207 |
T |
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| Q |
215 |
aaaaatggttgaaacaacatcaattggggttgaagatgatg |
255 |
Q |
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| T |
35780206 |
aaaaatggttgaaacaacatcagtttgggttgaagatgatg |
35780166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 43243091 - 43242874
Alignment:
| Q |
18 |
atattgaggttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcaaaattgtgtgattgttgttgagttcttgaaggtttgt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43243091 |
atattgaagttattgtgatatgatggtggctttgtgagtatgtttgttggttgatggaaatcgaaattgtgtgattgttgttgagttcttgaaggtttgt |
43242992 |
T |
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| Q |
118 |
atcaaagtttgtgttggtgatgttagaacatgattctggaaaaaatacttgtggttggtgttgttagattgaaaactgttgttgttcttgaggaagaaaa |
217 |
Q |
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| T |
43242991 |
atcagagtttgtgttggtgatgttagaacatgattatgg-aaaaatacttgtggttggtgttattagattgaaaattgttgctgttcttgagggagaaaa |
43242893 |
T |
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| Q |
218 |
aatggttgaaacaacatca |
236 |
Q |
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| T |
43242892 |
aatggttgaaacaacatca |
43242874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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