View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_75 (Length: 264)
Name: NF5400_low_75
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 30767909 - 30767675
Alignment:
| Q |
16 |
caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact |
115 |
Q |
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| T |
30767909 |
caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact |
30767810 |
T |
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| Q |
116 |
cacagtcatttctaggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767809 |
cacagtcatttctaggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcc |
30767710 |
T |
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| Q |
216 |
tatggattcttcttcagaggttcatcatcacaggt |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30767709 |
tatggattcttcttcagaggttcatcatcacaggt |
30767675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 5053594 - 5053472
Alignment:
| Q |
16 |
caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact |
115 |
Q |
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|||||||||||| |||||||| ||||||| | ||||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5053594 |
caaaaccaaaccccttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaact |
5053495 |
T |
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| Q |
116 |
cacagtcatttctaggccaaggttc |
140 |
Q |
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| T |
5053494 |
--cggtcatttctaggtcaaggttc |
5053472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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