View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_80 (Length: 254)
Name: NF5400_low_80
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 41133301 - 41133059
Alignment:
| Q |
1 |
gtagtttatctctttcaaaaatcagaatggtaaagttacatatggagatttaccatctttaatgatgaagctaaaggcattcatagatatgtacagtgaa |
100 |
Q |
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| T |
41133301 |
gtagtttatctctttcaaaaatcagaatggtaaagttacatatggagatttaccatctttaatgatgaagctaaaggcattcgtagatatgtacagtgaa |
41133202 |
T |
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| Q |
101 |
gatgagattaggtggatcttgaatgaatcagtcaatgattttccaactgatgttgatttggaagccttcttaatggtaagtaaattttatggttttcaca |
200 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
41133201 |
gatgagattagggggatcttgaatgaatcaggcaatgattttacaactgatgttgattttgaagccttcttaacggtaagtaaattttatggttttcaca |
41133102 |
T |
|
| Q |
201 |
tttatttttcaatattattaatagaaacgtgttttgttactag |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41133101 |
tttatttttcaatattattaatagaaacgtgttttgttactag |
41133059 |
T |
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