View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_low_85 (Length: 251)
Name: NF5400_low_85
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4712842 - 4713080
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712842 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
4712941 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712942 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
4713041 |
T |
|
| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4713042 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
4713080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4846797 - 4847035
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||| ||| |||||| ||||||||| |
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| T |
4846797 |
cgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggtactctcagtgaacatc |
4846896 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
4846897 |
tctatggttcggataatgaacctcttaggtggaatcaaagactcgagattctattaggtgcagcaagggggttgaattatcttcatgaaggtgcgaagca |
4846996 |
T |
|
| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||| |
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| T |
4846997 |
caatatcatacatcgtgacgttaagagtacaaacatatt |
4847035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4697966 - 4698204
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
| |
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||||| |||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||| ||| |
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| T |
4697966 |
cgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatc |
4698065 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||| | ||||| | |||||||| | |||||||| || | ||||||||||||| |||||||||||| |
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| T |
4698066 |
tctatggttcggataacgaacctcttacttggaagaagagactcgagattctattgggggcagcaagaggcctacattatcttcatgcaggtgcgaagca |
4698165 |
T |
|
| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
| |
|
||||||||||||||||| || |||||||| || ||||| |
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| T |
4698166 |
caatatcatacaccgtgatgtgaagagtaccaacatatt |
4698204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4784611 - 4784849
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| ||| |
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| T |
4784611 |
cgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatc |
4784710 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
| |
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| ||||| || |||||| ||||||||| ||||| || || ||| | ||||||||| |||| || |||| ||||||||||| |||| |||||||||||| |
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| T |
4784711 |
tttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatctgcatgcaggtgcgaagca |
4784810 |
T |
|
| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |
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| T |
4784811 |
caatatcatacaccgtgacgtgaagagtacaaacatatt |
4784849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4863229 - 4862991
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||| || ||||||||||| ||||||||||| ||| ||| |||||||||||||||| ||| |
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| T |
4863229 |
cgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgtggcactctccgtgaatatc |
4863130 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| | |||||| | ||||| || | ||||||||||| || ||||||||||||| |||| ||||| |
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| T |
4863129 |
tttatggttcggataatgaacctcttacttggaagaagagacttgagattctgttgggggcagcaagggggttacattatcttcatgctggtgtaaagca |
4863030 |
T |
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| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||||| |
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| T |
4863029 |
caatatcatacaccgtgacgtgaagagtaccaacatatt |
4862991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4817040 - 4817278
Alignment:
| Q |
1 |
cgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatc |
100 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||| ||||| ||| ||||| ||| |
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| T |
4817040 |
cgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatc |
4817139 |
T |
|
| Q |
101 |
tctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaaggtgcgaagca |
200 |
Q |
| |
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| ||||| || |||||| ||||||||| ||||| || || ||| | ||||||||| |||| || |||| ||||||||| | |||| |||||||||||| |
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| T |
4817140 |
tttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatttgcatgcaggtgcgaagca |
4817239 |
T |
|
| Q |
201 |
taatatcatacaccgtgacgttaagagtacaaatatatt |
239 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
4817240 |
caatatcatacaccgtgatgtgaagagtacaaacatatt |
4817278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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